Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0778
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.6  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   6.3  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   8.3  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   8.3  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 328 WRFSPHCLQKHHPPSLRVQYHQE--RLGYSH 414
           W  + HCL K   P+L V  H+E   +GYS+
Sbjct: 151 WDVTRHCLGKFKVPNLYVPRHEEWRMMGYSY 181


>SPMIT.06 |||mitochondrial DNA binding
          endonuclease|Schizosaccharomyces pombe|chr
          mitochondrial|||Manual
          Length = 807

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 87 WTCHLQAWGGPRQPQRAPQKVFRI 16
          WT HL +WG P   +   QKV  +
Sbjct: 22 WTIHLGSWGNPMPNRACVQKVLPV 45


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 362 THPHYVSNTIKNDLGILITSSNIVFNNRVRPISLSFD 472
           T   Y+S+ I    G+L++SS I   N V  ++LSF+
Sbjct: 852 TFQKYLSSFINRKFGVLLSSSFIQQLNTVENLNLSFN 888


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 173 HCYHMGVAALSC 138
           HCYH G+ AL C
Sbjct: 165 HCYHHGITALLC 176


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 179 WYLHQELCLRRLSAHRTLGAH 241
           W L   LCLR  + HR LG H
Sbjct: 36  WNLGIFLCLRCATIHRKLGTH 56


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 715 MRCHCHHCKYQFLLRGMCRARYEVR 641
           ++C CH   Y++  R M R+  E R
Sbjct: 425 VKCTCHDATYEYTRRKMIRSLIEFR 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,864
Number of Sequences: 5004
Number of extensions: 61603
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)