Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0778
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    32   0.53 
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717     30   2.1  
05_01_0430 - 3406472-3406490,3406662-3406681,3407330-3407428,340...    30   2.1  
04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851     30   2.1  
11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399           29   2.8  
03_02_0895 + 12230683-12230844,12230937-12230991,12231106-122311...    29   2.8  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    29   3.7  

>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = -2

Query: 712 RCHCHHC-KYQFLLRGMCRARYEVRQE--EPSR*GQWPPGPQSSRKSDHQWFSH*SPEDS 542
           R HC++C KY++  R +C   +   ++   P R      GP S R    +   + SP   
Sbjct: 281 RTHCNNCNKYRYS-REVCEPGHSPHRDYVNPPRGPARNLGP-SDRAPPREMARYGSPPRG 338

Query: 541 WREHR*P*LFPSSNPDRDASRYVVKTQRDR 452
           W     P  +P+ +P   A RY    QR+R
Sbjct: 339 WGSD--PKGYPARSPPDHAGRYADPVQRER 366


>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
          Length = 1055

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -3

Query: 165 PYGGGCPELPGYPPQYERSGPHARRRWTCHLQAWGG 58
           P  G     P  PPQ E  G H   R+ C  Q  GG
Sbjct: 76  PRSGRPKNQPSPPPQEEEEGNHGSARYDCTFQDEGG 111


>05_01_0430 -
           3406472-3406490,3406662-3406681,3407330-3407428,
           3407810-3407880,3407956-3408127
          Length = 126

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -3

Query: 171 LLPYGGGCPELPGYPPQYERSGPHARRRW-TCHLQAWGGPRQPQRAP 34
           LL  GG  P  PG+           RRRW +   +  GG R+PQ +P
Sbjct: 3   LLQAGGAEPRPPGFGSSGSPCRRRHRRRWCSWAARRMGGGRRPQESP 49


>04_04_0668 - 27109038-27109183,27109401-27109504,27109784-27109851
          Length = 105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 317 GLCRLSDEDFQRDFQV*IQQQAMSSGEHRACGEH*ASADKAPDEDTISHCYHM 159
           GLCRL   +  + FQV + Q+  S GE    G H AS  K P+ +  +   H+
Sbjct: 27  GLCRLRPLEISQFFQVHVWQKDGSLGE-CCLGGHYASICKEPNYERTTEASHI 78


>11_03_0002 - 8850264-8850418,8850645-8851772,8851895-8852399
          Length = 595

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 657 LDMRFDRRSLHVKVNGRLGRSPHASLTINGSHIDLQKIRGES 532
           LD  FD   L   +NG+LG   + S T+  S + L   RGES
Sbjct: 184 LDGNFDDNPLSATINGKLGDLSNCSSTVEESFV-LDVKRGES 224


>03_02_0895 +
           12230683-12230844,12230937-12230991,12231106-12231169,
           12231292-12231334,12231509-12231607,12231710-12231778,
           12231912-12232245,12232317-12232471,12232592-12233287
          Length = 558

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/37 (43%), Positives = 17/37 (45%)
 Frame = +1

Query: 133 ARQLRAATPIW*Q*LMVSSSGALSAEAQCSPHARCSP 243
           ARQ   A   W      SSSGA +A     PH RC P
Sbjct: 366 ARQAAPAPGYWPNCGFASSSGAGTASRSFLPHGRCPP 402


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 289 KSSSDSRHKPME--LWRFSPHCLQKHHP 366
           +S SDS HK ++   W F P  + +HHP
Sbjct: 144 QSDSDSSHKKLQGLSWSFPPSIVLEHHP 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,091,747
Number of Sequences: 37544
Number of extensions: 494202
Number of successful extensions: 1649
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)