Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0778
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.002
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.007
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    33   0.27 
Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    31   1.1  
AY313179-1|AAP79304.1|  782|Caenorhabditis elegans myotubularin-...    31   1.1  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024812-7|AAF59548.2|  419|Caenorhabditis elegans Hypothetical ...    30   1.9  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    29   3.4  
AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical ...    29   4.4  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    28   5.9  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +3

Query: 108 RNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHC 254
           R AR+VGG +   G+ P   A+ N    ++  CG S+L    ++TAAHC
Sbjct: 23  RIARVVGGFETVPGAFPWTAALRNKA-TKAHHCGASILDKTHLITAAHC 70


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +3

Query: 96  EHVDRNARIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHC 254
           ++V  + R++GGS+++  S P  V + + +      CGGS++    VLTAAHC
Sbjct: 50  DYVTLDHRLIGGSESSPHSWPWTVQLLSRLGHHR--CGGSLIDPNFVLTAAHC 100


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 201 VCGGSVLTARSVLTAAHC 254
           +CGG+++T + VLTAAHC
Sbjct: 61  ICGGTLITLKHVLTAAHC 78


>Z81546-9|CAD45596.2|  782|Caenorhabditis elegans Hypothetical
           protein F53A2.8b protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 129
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 117 RIVGGSQAAQGSHPHMVAMTNGIFIRSFVCGGSVLTARSVLTAAHCLL 260
           RI+GG+    G++     ++ G   +  +CG +V+    ++TAAHC L
Sbjct: 37  RIIGGNSIDDGANWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCAL 84


>AY313179-1|AAP79304.1|  782|Caenorhabditis elegans
           myotubularin-related protein MTM-6B protein.
          Length = 782

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  WRSLRLPGPSPSLKMTCPSSTSMWTGTLVLWG 129
           W ++ L G  PS+  + PSS+S W+   V  G
Sbjct: 16  WNNMSLSGIYPSISTSTPSSSSSWSSHFVFGG 47


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +1

Query: 466  F*LRTWRRPCQGCWRGRVRANGALSTNLLEINVRTIDGQTCVRTAAQAAIDLNVKAPPVE 645
            F L T+  PC  C RG        +T+    ++ + D   C+   A   I+ NV   P  
Sbjct: 2662 FDLSTFGGPCIQCPRGLT------TTSQASTSINSCDTINCID--ANTMINKNVTVGPST 2713

Query: 646  PHIELCTFHAEGT--GTCNGDS 705
            P+ E+C    +GT     N DS
Sbjct: 2714 PYSEICIACEQGTFQNVSNSDS 2735


>AC024812-7|AAF59548.2|  419|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.8 protein.
          Length = 419

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
 Frame = -2

Query: 703 CHHCKYQFLLRGMCRARYEVRQEEPSR*GQWPPGPQ---SSRKSDHQ 572
           CH+C  QF  RG  +    +   E     QW  G Q   SS KS H+
Sbjct: 279 CHYCTRQFSQRGALKTHMRLHTGERPFVCQWECGKQFASSSAKSHHE 325


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 204 CGGSVLTARSVLTAAHCLLLYSHLE 278
           C G++ + R +LTA HC   Y+  E
Sbjct: 75  CSGTLTSPRHILTATHCAATYTETE 99


>AC006695-9|AAF39977.1|  453|Caenorhabditis elegans Hypothetical
           protein W06H8.2 protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = -1

Query: 206 ADKAPDEDTISHCYHMGVAALSCLATPHNTSVPVHMLVEDGHVIFRLGEGPGSRKERHKK 27
           A+  P ++ I+     G      + T +    PVH+      +IF+ GE P +R+E +KK
Sbjct: 50  ANGVPTQEIINVYDKWGNGQFGVILTGNVQVSPVHLEAPGNAMIFKEGETP-ARREAYKK 108

Query: 26  YS 21
           ++
Sbjct: 109 WA 110


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 78  DMSIFYEHVDRNARIVGGSQAAQGSHPHMVA--MTNGIFIRSFVCGGSVLTARSVLTAAH 251
           +M +++  +  +A++  G  A+Q   P  V   + +     +  C G++++ R +L A H
Sbjct: 149 EMILYWLRIPFSAKVYNGRDASQSEAPWSVFTYLYSKDEQSATTCTGTIVSPRHILIATH 208

Query: 252 C 254
           C
Sbjct: 209 C 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,544
Number of Sequences: 27780
Number of extensions: 376965
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)