Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0778
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct...    28   5.5  
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi...    28   5.5  
At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SD...    28   7.2  

>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
           RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
           PIR2:A28490
          Length = 725

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 147 PELPGYPPQYERSGPHARRRWTCH 76
           P+ PG PPQ+   GPHA   +  H
Sbjct: 362 PQGPGGPPQWGSRGPHAPHPYDYH 385


>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
           to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
           associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
           splicing factor SF3b 49 kDa subunit) {Homo sapiens};
           contains Pfam profile PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 363

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = -3

Query: 138 PGYPPQYERSGPHARRRWTC-HLQAWGGPRQPQRAP 34
           P  PP  +  G H    W   H+Q  GGP Q Q+ P
Sbjct: 312 PRPPPPPQAMGMHQHGGWPPQHMQQQGGPPQQQQPP 347


>At4g10020.1 68417.m01639 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 389

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 156 GGCPELPGYPPQYERSGPH 100
           GG P +P  PP+Y  S PH
Sbjct: 341 GGPPRVPASPPRYTASPPH 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,280
Number of Sequences: 28952
Number of extensions: 355777
Number of successful extensions: 1059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)