Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0772
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0200 + 11560278-11560549,11561124-11561205,11561238-115612...    28   5.5  
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266...    28   5.5  
08_02_0974 + 23200053-23200167,23200184-23200665                       27   9.7  
06_03_1153 - 28047125-28047751                                         27   9.7  

>11_03_0200 +
           11560278-11560549,11561124-11561205,11561238-11561297,
           11565714-11565801,11565935-11565942,11566431-11566522,
           11567269-11567275
          Length = 202

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = -2

Query: 369 NRGGVDGSNDDGLRDNGAL----FSLFDDNNGLGLDFSGSNRTPVGTLTFTMSCTR 214
           +RG   G+NDDG R   AL    F L DD +  G +F+G    P  T     S +R
Sbjct: 4   SRGDESGTNDDGKRGCRALPLAAFLLSDDVHDEG-EFAGGRLIPTTTSLLVPSGSR 58


>03_01_0336 -
           2659349-2659486,2659607-2659758,2660257-2660365,
           2660459-2660563,2660874-2660957,2661072-2662745
          Length = 753

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 360 GVDGSNDDGLRDNGALFSLFDDNNGLGLD--FSGSNRTPVGTLTFTMSC 220
           G+D    +G  D   + +  DD  G G D  ++G  + P G++ +  SC
Sbjct: 111 GLDNERRNGTVDKSRVDAHIDDKLGSGRDRNWTGKTQEPEGSVDYLRSC 159


>08_02_0974 + 23200053-23200167,23200184-23200665
          Length = 198

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -2

Query: 375 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRTPV 247
           R  +   DGS        GA F+L D N G G   SGS    +
Sbjct: 93  RKKKSRRDGSTRKKEASEGARFALEDGNGGTGYVMSGSRHARI 135


>06_03_1153 - 28047125-28047751
          Length = 208

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -1

Query: 244 DVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 140
           DV VH   H     GG   S +   GL GSS   T
Sbjct: 142 DVTVHHHHHHYGANGGGGHSANGGGGLDGSSSIGT 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,863,745
Number of Sequences: 37544
Number of extensions: 99663
Number of successful extensions: 404
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)