Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0772
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)                 29   3.2  
SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.3  
SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)                   28   4.3  
SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)                     27   9.9  
SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
          Length = 1450

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 345 NDDGLRDNGALFSLFDDNNG 286
           NDDG  D G++F   DD+NG
Sbjct: 894 NDDGGLDGGSVFDAVDDDNG 913


>SB_51503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLRDNGALFSLFD----DNNGLGLDFSGSN 259
           D+ GG DGS+DD + DNG+   + D    DN+G G D  G +
Sbjct: 259 DDDGGDDGSDDD-VGDNGSDDGIDDVDSGDNDGDGSDGGGDD 299


>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLG 280
           DN  G   SND+G  +NG+     DDNNG G
Sbjct: 125 DNNNGAC-SNDNGNDNNGSYHYGNDDNNGAG 154


>SB_34739| Best HMM Match : DUF360 (HMM E-Value=0.39)
          Length = 1024

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLR----DNGALFSLFDDNNGLGL-DFSGSNRTPVG 244
           D+ GG D  +DD       DNG     +DD+NG+G+ ++   N   VG
Sbjct: 83  DDDGGSDDDHDDDNGNYDDDNGVGVGNYDDDNGVGVGNYDDDNGVGVG 130



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGL-DFSGSNRTPVG 244
           DN  GV G+ DD   DNG     +DD+NG+G+ ++   N   VG
Sbjct: 113 DNGVGV-GNYDD---DNGVGVGNYDDDNGVGVGNYDDDNGVGVG 152


>SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 247 GDVDVHDELHKRR--GTGGNSRSNDNRSGLHGSS 152
           G + V  + HK++  G GG+ R  +  SG +GS+
Sbjct: 19  GGIPVLSQCHKKKKSGDGGSERGRERESGAYGSN 52


>SB_39714| Best HMM Match : Lipin_N (HMM E-Value=0)
          Length = 1311

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 369  NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 262
            N  GVDG +DD   D+G+     DD +G G+   GS
Sbjct: 1071 NGSGVDGDDDDVDGDDGSGSVDGDDGSGGGVGDDGS 1106


>SB_7859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLRDNGALFSLFDDNNG 286
           D  G  DG +DDG+ DNG +  + DD  G
Sbjct: 202 DGDGDDDGGDDDGVVDNGDV--VVDDGGG 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,974,748
Number of Sequences: 59808
Number of extensions: 119350
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)