Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0772
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62130.1 68414.m07010 AAA-type ATPase family protein contains...    29   2.0  
At3g18660.1 68416.m02370 glycogenin glucosyltransferase (glycoge...    28   3.5  
At3g44370.1 68416.m04767 expressed protein weak similarity to At...    27   8.1  

>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 1025

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 23  LIAVASARVFEPISVGPALVDTYEPIDTEPAYVDIPIP 136
           ++ V +A+ FE +  GPAL+D  + +D      D  IP
Sbjct: 375 ILGVMTAKEFESLMNGPALIDRGKSLDLSSGQGDSSIP 412


>At3g18660.1 68416.m02370 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Homo sapiens [SP|P46976], Oryctolagus cuniculus
           [SP|P13280]
          Length = 655

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 76  CRSNGNWFKDTGRSH 32
           CR  GNW +D GR H
Sbjct: 218 CRKEGNWSRDVGRLH 232


>At3g44370.1 68416.m04767 expressed protein weak similarity to
           AtOXA1 [Arabidopsis thaliana] GI:6624207
          Length = 338

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = -2

Query: 372 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGS 262
           D+  GV GSND GL  + ++ SL   +NG GL+F  S
Sbjct: 60  DSIAGV-GSNDHGLEFDDSIASL--GSNGHGLEFGDS 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,203,169
Number of Sequences: 28952
Number of extensions: 75939
Number of successful extensions: 237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)