Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0771
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 29 0.39
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 29 0.52
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 2.1
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 2.8
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 6.4
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 6.4
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 8.4
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 25 8.4
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 8.4
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 373 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLDESS 245
F+ S H+ R R ++RME C ++ Y+ T LD+++
Sbjct: 27 FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLDQAA 69
>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 96
Score = 28.7 bits (61), Expect = 0.52
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 259 AWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFYAIN-YGRIKHHKNY 393
+++ W +K K AP L+ +VF YA Y I+HH+ +
Sbjct: 51 SFFSWYYKKYLGKNASGAPLLHLVGAVLVFSYASEYYYHIRHHEEH 96
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +2
Query: 188 LNEIGS-WFGRRSKTPSAVAGAFIEPGGDGNISTYN 292
LN IG+ F +S+ PS+ +G+F+ P + Y+
Sbjct: 176 LNSIGNKMFSLKSRVPSSSSGSFVAPPPQMRLPAYS 211
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 26.2 bits (55), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 256 DESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 122
+ESS HG SL A +P T V L W+ +F+ R+ Y
Sbjct: 23 NESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.0 bits (52), Expect = 6.4
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +2
Query: 251 FIEPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 355
+ EP G+G+I+T N RL L S +N++ AAW ++
Sbjct: 287 YSEPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 62 ASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPD 166
A S+N A+G P+ Y P P P Y +P+
Sbjct: 87 APAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPN 121
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 458 NKTDYILIHTATGTESVL*WY 396
N D I +H T ESV+ WY
Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 212 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 108
R +NR + D +E +V ++ + RK +QDYT
Sbjct: 88 RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +2
Query: 68 GFSKNMAFGDYPKEYNPAVHGPYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVA 244
G N +Y ++ P PY P Y G PF Q + + + FG S+ +VA
Sbjct: 28 GMPINQGGMNYQQQTYP-YQQPYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVA 86
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 315 WSHANLLRLYVLMLPSPPGSMKAPA 241
W+HA + Y++ P P G + A A
Sbjct: 254 WAHAGHVPPYIIKFPRPVGMLLATA 278
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 100 VITESHIFRKARCTFLKINSSRYLPNTYFSFSE 2
+I H F A C F+ +S++ L N Y +E
Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,083,227
Number of Sequences: 5004
Number of extensions: 43271
Number of successful extensions: 107
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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