Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0771
         (502 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             28   3.8  
SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)                     27   6.6  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)               27   8.7  
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)              27   8.7  
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   27   8.7  

>SB_31829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = +1

Query: 202 FVVRSPQQDSVCRGRSFHRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFYAINYGRIK 378
           +VVR+   +++ RG S  R W  ++ KYV  K   M PF+  +  +    YAI Y  +K
Sbjct: 15  YVVRNASLENMWRGMS--RVWNSYRAKYVTCKNARMTPFWHAVFVAAALNYAIEYNHLK 71


>SB_13460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/60 (21%), Positives = 29/60 (48%)
 Frame = +1

Query: 232 VCRGRSFHRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFYAINYGRIKHHKNYKYH*RT 411
           V R    +R +  ++H  +    V +  F +L V     ++ + Y   +H+++Y+Y+  T
Sbjct: 13  VYRSNRHYRNYRHYRHTVITVSTVNLLAFVKLSVYVTSPYFPVVYRSNRHYRHYRYYRHT 72


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 164 DTPFSQLKLNEIGSWFGR 217
           D+P +QL LNEI SWF R
Sbjct: 423 DSPDTQLTLNEIYSWFTR 440


>SB_29112| Best HMM Match : Mucin (HMM E-Value=1.7)
          Length = 493

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 74  SKNMAFGDYPKEYNPAVH-GPYDPARYYGKPDTPFSQLKLNEIGS 205
           SK +  G +PK  NPA H  P +PA  + KP  P +  K    G+
Sbjct: 246 SKALETGTHPKPTNPATHPKPTNPAT-HPKPTNPGTNPKPTNPGT 289


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 316 FYQLLVGSMVFFYAINYGRIKHHKNYKYH*R 408
           F+ L    M FFY   Y +I+HHK    H R
Sbjct: 184 FFVLPFALMCFFYLKIYLKIRHHKKQTAHMR 214


>SB_38607| Best HMM Match : Gelsolin (HMM E-Value=0.0024)
          Length = 693

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 56  KSASGFSKNM-AFGDYPKEYNPAVHGPYDPARYYGK 160
           +S SG  K + A G    E +   HGPYDP   YGK
Sbjct: 69  QSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPYGK 104


>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
          Length = 1866

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 56   KSASGFSKNM-AFGDYPKEYNPAVHGPYDPARYYGK 160
            +S SG  K + A G    E +   HGPYDP   YGK
Sbjct: 1624 QSLSGQRKTVFALGKQLYESSFKGHGPYDPIYPYGK 1659


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 267 PPGSMKAPATADGVLLRRPNHEPIS 193
           PPG++  P+T +  +LRR N  P S
Sbjct: 426 PPGNLSLPSTNEKQVLRRTNSAPES 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,386,865
Number of Sequences: 59808
Number of extensions: 324528
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)