Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0771
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02835.1 68415.m00229 hypothetical protein 28 3.1
At3g15160.1 68416.m01917 expressed protein 28 4.1
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 27 5.4
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 27 5.4
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 27 5.4
At1g23760.1 68414.m02998 BURP domain-containing protein / polyga... 27 5.4
At1g12710.1 68414.m01474 F-box family protein / SKP1 interacting... 27 5.4
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /... 27 7.1
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 27 9.4
At1g76990.3 68414.m08966 ACT domain containing protein low simil... 27 9.4
At1g76990.2 68414.m08965 ACT domain containing protein low simil... 27 9.4
At1g76990.1 68414.m08964 ACT domain containing protein low simil... 27 9.4
At1g67840.2 68414.m07743 ATP-binding region, ATPase-like domain-... 27 9.4
At1g67840.1 68414.m07744 ATP-binding region, ATPase-like domain-... 27 9.4
>At2g02835.1 68415.m00229 hypothetical protein
Length = 198
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 101 PKEYNPAVHGPYDPARYYGKPDTPFSQL 184
P+EY ++ PY P PD+PF+ L
Sbjct: 121 PEEYEDSLISPYIPEAVLRSPDSPFALL 148
>At3g15160.1 68416.m01917 expressed protein
Length = 562
Score = 27.9 bits (59), Expect = 4.1
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +3
Query: 36 LLELI---FRKVHRAFLKIWLSVITPRSIILLY---MGLTILHATMENLILHSVS*S*TK 197
LL+LI + K+ ++FLKI+ +I+P S + L+ + L IL +E + S S S
Sbjct: 151 LLKLIAWNWEKLEKSFLKIFPGLISPGSFLPLFPSIVDLPILVVALEKVERSSGSGS--- 207
Query: 198 SVRGSVAAARLRLPWPELSSSLVEMA 275
V GS+A+ + + PE+ +L++ A
Sbjct: 208 RVGGSIASIQ-KSAAPEMLLALMDEA 232
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +2
Query: 215 RRSKTPSAVAGAFIEPGGDGNISTY 289
R S+ P A+AG F PGG G Y
Sbjct: 181 RMSRPPVAIAGGFGAPGGYGAYDAY 205
>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 95 DYPKEYNPAVHGPYDPARYYG 157
DYP EY AV G YD YG
Sbjct: 67 DYPNEYITAVGGSYDTVFGYG 87
>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 95 DYPKEYNPAVHGPYDPARYYG 157
DYP EY AV G YD YG
Sbjct: 67 DYPNEYITAVGGSYDTVFGYG 87
>At1g23760.1 68414.m02998 BURP domain-containing protein /
polygalacturonase, putative similar to polygalacturonase
isoenzyme 1 beta subunit [Lycopersicon esculentum]
GI:170480; contains Pfam profile PF03181: BURP domain
Length = 622
Score = 27.5 bits (58), Expect = 5.4
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Frame = +2
Query: 59 SASGFSKNMAFGDYPKEYNPAVHGPYDPARYYGK----PDTPFSQ--LKLNEIGSWFGRR 220
S G + F Y E N GP YGK FS + N IGS F
Sbjct: 214 SDEGNGRAQTFKTYTHEANS---GPGQSFTSYGKNGNGAPNEFSSYGVSSNVIGSDFSNY 270
Query: 221 SKTPSAVAGAFIEPGGDGNISTYNLR 298
+ +A F GGDGN+ N +
Sbjct: 271 GENGNAANDTFKGYGGDGNVPQNNFK 296
>At1g12710.1 68414.m01474 F-box family protein / SKP1 interacting
partner 3-related contains Pfam profile PF00646: F-box
domain
Length = 291
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 173 FSQLKLNEIGSWFGRRSKTPSAVAGAFIEP 262
F +L+L G WFGRR V G I+P
Sbjct: 182 FFRLQLGRSGKWFGRRVCNTEQVHGWDIKP 211
>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
phosphatase and tensin, putative (PTEN1) identical to
phosphatase and tensin homolog [Arabidopsis thaliana]
GI:21535746
Length = 412
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 80 NMAFGDYPKEYNPAVHGPYDPARYYGKPDT-PF 175
+M D+ K YN + YDP +YG+ + PF
Sbjct: 86 DMRHPDHYKVYNLCIEESYDPDNFYGRVERFPF 118
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 26.6 bits (56), Expect = 9.4
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 235 RRSL-AAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCT 59
RRS+ AA E + QL L + +I +VRP + + G TE+ IFR A
Sbjct: 918 RRSIWKAAVESSKNISQLALQVRYLDMNIRWSELVRPEQNVQDVKGPETEATIFRNASIC 977
Query: 58 FLKI--NSSRY 32
KI N RY
Sbjct: 978 VKKIIDNKVRY 988
>At1g76990.3 68414.m08966 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 221 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 111
C DR F T M+Y VFH+++ +H Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308
>At1g76990.2 68414.m08965 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 221 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 111
C DR F T M+Y VFH+++ +H Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308
>At1g76990.1 68414.m08964 ACT domain containing protein low
similarity to uridylyltransferase SP|P56884 from
Rhizobium meliloti; contains Pfam ACT domain PF01842
Length = 453
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 221 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 111
C DR F T M+Y VFH+++ +H Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308
>At1g67840.2 68414.m07743 ATP-binding region, ATPase-like
domain-containing protein contains Pfam profile PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein; similar to ESTs gb|AI995396.1,
dbj|AV557393.1, and dbj|AV557055.1
Length = 445
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 161 PDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFIEPGGDGNISTYNLRRLAWLHSIN 325
P F +L L ++ + R+ P+AV ++ P G + LRR+ S+N
Sbjct: 113 PSPDFQRLCLEQLDLF--RQIVDPNAVLSIYVRPAGSYVMDRLELRRVTCYPSVN 165
>At1g67840.1 68414.m07744 ATP-binding region, ATPase-like
domain-containing protein contains Pfam profile PF02518:
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like
domain protein; similar to ESTs gb|AI995396.1,
dbj|AV557393.1, and dbj|AV557055.1
Length = 611
Score = 26.6 bits (56), Expect = 9.4
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 161 PDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFIEPGGDGNISTYNLRRLAWLHSIN 325
P F +L L ++ + R+ P+AV ++ P G + LRR+ S+N
Sbjct: 113 PSPDFQRLCLEQLDLF--RQIVDPNAVLSIYVRPAGSYVMDRLELRRVTCYPSVN 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,267
Number of Sequences: 28952
Number of extensions: 223400
Number of successful extensions: 646
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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