Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0769
         (531 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   3.0  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    26   3.0  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   9.3  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 237 GAVYLTLTACELAVAARVTTKLRNS 163
           G + +  TACE  +AARV  KL+ S
Sbjct: 328 GVMDVRTTACEALLAARVEQKLKGS 352


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 288 LGHPYFPGSDGLTRL 244
           LGHP FPG  G+ +L
Sbjct: 228 LGHPLFPGESGIDQL 242


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 267 PGSRGVPVRDCPPCRGRGRFNF 332
           PG   +P R C  C+G G+ +F
Sbjct: 185 PGDPRIPGRVCGNCKGSGQLDF 206


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 223 HVDSLRAGCRSTSHNEAP*QSIIWS 149
           +V+S   G  STS+N+ P QS+  S
Sbjct: 336 NVNSYNGGIPSTSYNDTPQQSVTGS 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,020
Number of Sequences: 5004
Number of extensions: 36029
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)