Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0769
(531 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.1
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 28 4.1
04_04_1142 + 31194801-31194952,31195548-31196037,31196463-311965... 28 4.1
01_02_0078 - 10894871-10895841,10897268-10898426 28 4.1
10_01_0133 + 1621574-1625779 28 5.4
01_01_0088 + 688792-691441,691629-693013 28 5.4
09_04_0306 + 16555664-16556623 27 7.1
03_02_0553 - 9420960-9421164,9421634-9421812,9421902-9421970,942... 27 7.1
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 27 7.1
09_03_0057 + 11944973-11947159 27 9.4
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 9.4
07_03_1555 - 27669981-27670148,27670232-27670315,27670349-276703... 27 9.4
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 27 9.4
06_01_0105 + 850003-850455 27 9.4
05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351 27 9.4
05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003 27 9.4
02_04_0090 - 19643182-19643322,19644192-19644335,19644563-196446... 27 9.4
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 9.4
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 237 PPVD-ASGRPSP-GSRGVPVRDCPPCRGRGR 323
PP+ ASGRP P S+G+ PP GRGR
Sbjct: 782 PPLHGASGRPHPPSSKGLNAPAPPPLLGRGR 812
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 277 GVSQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
G + T +VG GG G T + N R HF+V++W
Sbjct: 200 GERNYCTSAIVGHGGAGKTTLAQYIYNDERVVNHFDVRMW 239
>04_04_1142 +
31194801-31194952,31195548-31196037,31196463-31196546,
31196611-31196682,31196967-31197026,31197299-31197310
Length = 289
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = -3
Query: 334 RKLNRPRPRQGGQSR---TGTPLLPG-LGRPDASTG-GRRVPHVDSLRAGCRSTSHNEAP 170
R+ R RPR+GGQ G PL G LGR D + G G +V H A C + P
Sbjct: 152 RRPLRRRPRRGGQGHGGLEGGPLQGGQLGREDGARGAGDQVHHA---LAACPGQAQGLVP 208
Query: 169 *QSII-WSNTAYCQ 131
+S+ A C+
Sbjct: 209 PDCFFEFSSEALCE 222
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 204 ARRLST*GTRRPPVDASGRPSPGSRGVPVRDCPPCRGRGR 323
A RL + GT+ P + S S S +P R PPCRGR R
Sbjct: 428 APRLGSGGTK-PQAEVSRWRSRSSAPLP-RPVPPCRGRRR 465
>10_01_0133 + 1621574-1625779
Length = 1401
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 292 ATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
A + +VG GG+G T T + R HF+V+IW
Sbjct: 221 AVLPVVGPGGIGKTTFTQHLFHDQRVKKHFHVRIW 255
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 304 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
+VG GGVG T N R HF V IW
Sbjct: 257 IVGPGGVGKTTFAQHLYNDHRTKQHFTVMIW 287
>09_04_0306 + 16555664-16556623
Length = 319
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 318 PAPDKADSREL-GHPYFPGSDGLTRLPAGAVYLTLTACELA 199
PAP + S + G P P + L R+PA A+ + A LA
Sbjct: 194 PAPPGSVSHPINGSPVVPAAAALWRVPAAAIAVAAAAAPLA 234
>03_02_0553 -
9420960-9421164,9421634-9421812,9421902-9421970,
9422452-9422607,9422756-9422968
Length = 273
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/31 (54%), Positives = 18/31 (58%)
Frame = -3
Query: 322 RPRPRQGGQSRTGTPLLPGLGRPDASTGGRR 230
RPRPR GG+ R G G G P S GGRR
Sbjct: 219 RPRPRGGGRRRGGG---GGSGGPGGS-GGRR 245
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 280 VSQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
+S F+ + +VG GGVG T + N + HF++ IW
Sbjct: 222 ISCFSVLPIVGIGGVGKTTLAQHICNHPQVKSHFDLIIW 260
>09_03_0057 + 11944973-11947159
Length = 728
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 313 GGVGSTFVTLQFRNSARRGYHFNVQIW 393
GGVG T + Q N R +F+V+IW
Sbjct: 264 GGVGKTTLARQVYNDERVKGYFDVRIW 290
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 313 GGVGSTFVTLQFRNSARRGYHFNVQIW 393
GG+G T + N AR HF++Q W
Sbjct: 671 GGMGKTTLARLVYNDARVQNHFDIQAW 697
>07_03_1555 -
27669981-27670148,27670232-27670315,27670349-27670360,
27670683-27670761,27670840-27671078,27671167-27671260,
27671342-27671484,27671688-27671786,27671870-27671998,
27672123-27672197,27672308-27672520,27672581-27672676,
27673282-27673380,27673600-27673839,27674212-27674322,
27674429-27674626,27674720-27674835,27675076-27675193,
27675761-27675866,27675972-27676030,27676259-27676388,
27676730-27676887,27677672-27677887,27677972-27678082,
27678313-27678472,27679364-27679509,27679603-27679695,
27680610-27680706,27681224-27681294,27681407-27681505,
27682037-27682168,27682287-27682729,27683252-27683564,
27684301-27684549
Length = 1631
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +3
Query: 195 RQPARRLST*GTRRPPVDASGRPSPGSRGVPVRDCP 302
R ARRL GTR PP+ A+ R G V D P
Sbjct: 36 RSAARRLRARGTRAPPLAAARRGWGGVSPRAVLDLP 71
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = -3
Query: 214 SLRAGCRSTSHNEAP*QSIIWSNTAYCQTVCSASRAGVSH---FIS*HGDDCGQHEQKSE 44
S + +TS+NE P +SII Q +C+ A H +S G + G +
Sbjct: 693 SAKNSTENTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVSEIGPEFGPSNDVCK 752
Query: 43 LHLVAKK 23
VAKK
Sbjct: 753 TETVAKK 759
>06_01_0105 + 850003-850455
Length = 150
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 276 YFPGSDGLTRLPAGAVYLTLTACELAVAARVTTKLRNSLSF 154
Y GS G T + AGA + L+A AVAA N F
Sbjct: 37 YGGGSGGATFMRAGAALVLLSATAQAVAATAARAAANGARF 77
>05_05_0318 + 24052022-24053858,24053935-24054132,24054363-24055351
Length = 1007
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 304 LVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
+VG GGVG T +T N R HF +++W
Sbjct: 200 IVGMGGVGKTTLTQLVYNDVRVKKHFQLRMW 230
>05_03_0342 - 12704683-12704736,12704827-12704895,12704969-12706003
Length = 385
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 386 RFGDAKPHLSTRKTHMHLFVTQR 454
+ +A PH S R TH+H F+ R
Sbjct: 15 KHANAIPHASARPTHLHTFLIPR 37
>02_04_0090 -
19643182-19643322,19644192-19644335,19644563-19644626,
19644710-19644796,19645371-19645513,19645706-19645771,
19645954-19646046,19646165-19646230,19646363-19646433,
19646882-19646982,19647217-19647317,19647421-19647528,
19647639-19648064
Length = 536
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 319 PRPRQGGQSRTGTPLLPGLGRPDASTGGRRVP 224
PR R ++R GT PGL RP + R+P
Sbjct: 61 PRWRHDVRARAGTIQAPGLARPGGAVETDRLP 92
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 283 SQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
S V LVG GGVG T + N+ R HF++++W
Sbjct: 433 SDLDVVPLVGVGGVGKTTLARFVYNNNRIENHFDLRMW 470
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,259,749
Number of Sequences: 37544
Number of extensions: 275466
Number of successful extensions: 935
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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