Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0769
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         29   3.1  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   7.2  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   27   7.2  
SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14)               27   9.5  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           27   9.5  

>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 198 QPARRLST*GTRRPPVDASGR----PSPGSRGVPVRDCPPCRGRG 320
           Q  R+ S    RR  + ASGR    P+P  RG P R  PP  G G
Sbjct: 431 QGERKTSDPAFRRNRLTASGRRVKLPAPKPRGAPYRPSPPRTGDG 475


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 231 RRPPVDASGRPSPGSRGVPV-RDCPPCRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLN 404
           R+PP +A   P  G  G+P+    PP R + RFN   +P      +RI    +  G LN
Sbjct: 132 RQPPPEAYIPPDHGMLGIPIPLRRPPIRSQRRFN-PQAPRVPTGPRRIDRPKSVPGLLN 189


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 318 PAPDKADSRELGHPYFPGS 262
           P PD AD +E   PYFP S
Sbjct: 353 PLPDSADPKENTKPYFPQS 371


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 201 PARRLST*GTRRPPVDASGRPSPGSRGVPVRDCPPCRG 314
           P  R+ T     PP  +S RP P SRG P    PP  G
Sbjct: 318 PPARMGTAPPPPPPSRSSQRPPPPSRGAPP---PPSMG 352


>SB_21523| Best HMM Match : Pkinase (HMM E-Value=9.5e-14)
          Length = 322

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 333 RHSPVQKLSTKRISLQCTDL 392
           RH+PV K++  R+S  C DL
Sbjct: 191 RHNPVLKIAGPRVSADCRDL 210


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 225  GTRRPPVDASGRPSPGSRGVPVRDCPPCRGRGRFNFRHS 341
            G+  P    S R SPG    P++    CR RG  +F  S
Sbjct: 1279 GSTSPSPFTSKRTSPGLNESPMKKAKLCRRRGLLDFLDS 1317


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,471
Number of Sequences: 59808
Number of extensions: 294126
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)