Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0769
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z71258-1|CAA95780.1|  307|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 339 SPVQKLSTKRISLQCTDLGTLNLICPPVKHIC 434
           S  Q  S+   + +CT +G++ L CP V  +C
Sbjct: 415 SNCQTASSCTSNFECTSIGSMQLCCPTVASVC 446


>Z71258-1|CAA95780.1|  307|Caenorhabditis elegans Hypothetical
           protein C01H6.1 protein.
          Length = 307

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 198 QPARRLST*GTRRPPVDASGRPSPGSRGVPVRD 296
           +P + +   G   PP ++    +PGSRGVP  D
Sbjct: 97  EPTKPVCPPGPPGPPGNSGSPGNPGSRGVPGED 129


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 195 RQPARRLST*GTRRPPVDASGRPS-PGSRGVPVRDCPP--CRGRGRFNFRHSPV 347
           R P R+L+   T RPPV  + RP+ P SR  PV   P        + +  HSP+
Sbjct: 93  RPPPRKLAQ--TPRPPVVTTQRPAPPQSRPPPVTRRPTFISTTTSKLSTTHSPI 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,135,218
Number of Sequences: 27780
Number of extensions: 226131
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)