Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0769
         (531 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS...    29   2.6  
At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR cla...    28   3.4  
At4g35070.1 68417.m04978 expressed protein                             27   6.0  
At1g51580.1 68414.m05806 KH domain-containing protein                  27   6.0  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    27   7.9  

>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
           (RSP31) identical to SP|P92964 Arginine/serine-rich
           splicing factor RSP31 {Arabidopsis thaliana}
          Length = 264

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/34 (47%), Positives = 16/34 (47%)
 Frame = +3

Query: 195 RQPARRLST*GTRRPPVDASGRPSPGSRGVPVRD 296
           R P R LS    RRP  D   RPSPG    P  D
Sbjct: 176 RSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSPD 209


>At3g14460.1 68416.m01832 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 271 EVGVSQFATVRLVG-GGVGSTFVTLQFRNSARRGYHFNVQIW 393
           E+ + + A + +VG  GVG T +T    N  R   HF V++W
Sbjct: 187 EISIGKPAVISVVGMPGVGKTTLTEIVFNDYRVTEHFEVKMW 228


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 306 CRGRGRFNFRHSPVQKLSTKRISLQCTDLGTLNLICPPVKHICICL 443
           C G G  N    P +K+        C   G   ++  P +H+C C+
Sbjct: 197 CGGEGDGN--SLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCM 240


>At1g51580.1 68414.m05806 KH domain-containing protein
          Length = 621

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 225 GTRRPPVDASGRPSPGSRGVPVRDCPPCRGRGRFNFRHSPV 347
           G  RPP   S  P PG  G P    PP    G F  R+ P+
Sbjct: 500 GFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHG-FALRNEPI 539


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 282 VPVRDCPPCRGRGRFNFRHSPV 347
           V V D P   GRGR+N R SPV
Sbjct: 262 VDVYDLPGPAGRGRYNRRMSPV 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,215
Number of Sequences: 28952
Number of extensions: 200773
Number of successful extensions: 470
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)