Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0768
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 29 0.44
SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces pom... 29 0.77
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 28 1.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.3
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc... 27 2.3
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 27 2.3
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 5.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.4
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 9.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.5
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 9.5
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 25 9.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.5
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 25 9.5
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -1
Query: 265 YDSGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 86
+ S P+ +G+N + P GSN T A + + +S +G +SM P T
Sbjct: 136 FPSVPSSLGSNHQFITTPPVNGSNEPTSAQTNHIITANSSPSGNAGSNASASMSVPPPLT 195
Query: 85 P 83
P
Sbjct: 196 P 196
>SPAC19A8.14 |||aminoacyl-tRNA hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 28.7 bits (61), Expect = 0.77
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 316 DLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 215
+L + A+S G RV++D+G T+I + S+T+ G
Sbjct: 153 ELLQAQAMSLGLCARVIHDAGRTQIASGSATVLG 186
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 28.3 bits (60), Expect = 1.0
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = -1
Query: 460 LGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRA-SLVDVQNDLHERSAVSNG 284
LG +NN+ SN + N+N G + S +G A S ++ + + +N
Sbjct: 557 LGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNN 616
Query: 283 GKRRVVYDSGPTEIGTNSSTMAGPTEIGSNSLTMA 179
+ ++ N+S+ G ++ GS L A
Sbjct: 617 NNQNYGNNNNQNYNNNNNSSQGGNSQGGSGLLGQA 651
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 382 DNGIDTGSGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEI 242
D G DT G N +D D++E S G KR++ Y++GP +
Sbjct: 448 DEGDDTLYGTNDAE---MDDMLDIYETDE-SVGSKRKIAYENGPLRL 490
>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
Nse4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -1
Query: 361 SGDNRGRASLVDVQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSSTMAG 215
+G+ R ++D+ DL+E K ++ P E TNS+T G
Sbjct: 252 AGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNSNTWYG 300
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -2
Query: 624 KFRLRAPESGHVGHVDIDRYSVKGLRKSDSGCGNDGS 514
++ L P VGH + RY + L S + G+ S
Sbjct: 355 EYELHLPSGNRVGHRSLSRYFRQNLHSSSTAVGDGAS 391
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +2
Query: 263 VDNPPLAPVADSTPLVQIILNINQASSAPIVPGP 364
V PP+APVA P V + AP VP P
Sbjct: 604 VPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 260 IVDNPPLAPVADSTPLVQIILNINQASSAPIVPGPG 367
+V P P + P+V + ++ Q + P+VP G
Sbjct: 657 VVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAG 692
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -1
Query: 325 VQNDLHERSAVSNGGKRRVVYDSGPTEIGTNSST 224
+ N+L RS+ +GGK R+ DS +SS+
Sbjct: 3 LSNELFHRSSKDHGGKSRICLDSSEDTYPPHSSS 36
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 487 GSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRD 380
GSNV +++ GD + D N ++++ + DN GL D
Sbjct: 246 GSNVDDVEDSGDSSSDKN-SINHE---IRDNEGLED 277
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -1
Query: 259 SGPTEIGTNSSTMAGPTEIGSNSLTMAGPTEMGSNSSMMAGPTAIGTKSSMMGAGPAT 86
S PT + SST++ + S+ + + M S+SS + PT+ + S + P++
Sbjct: 298 SSPT---STSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/78 (26%), Positives = 40/78 (51%)
Frame = -1
Query: 493 SNGSNVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGIDTGSGDNRGRASLVDVQND 314
S+ SN S + + DGA+ +G+ +DF V+ + +N D +G+N V ++ D
Sbjct: 342 SHSSNAS--ENIVDGAVTQANGIESDFTRVDHEPIIVNN--DDENGNNESENEEV-IEED 396
Query: 313 LHERSAVSNGGKRRVVYD 260
R+ ++ + +VV D
Sbjct: 397 NLNRNVIAE-AQNQVVAD 413
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.4
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = -3
Query: 206 DRFEFVDNGRSDGNGLELIYDGRSDSDRYKVVDDGSRSGNAGXHQALSRAGDSNG-HHGS 30
+R ++ S+ N + + +G+ + R D S N+ + A+SRAG SNG + G+
Sbjct: 1496 ERSSEANHRTSNDNKRDEVTEGKDKNKR----QDISGESNSRQNNAISRAGRSNGSNRGN 1551
Query: 29 EGQE 18
+ ++
Sbjct: 1552 DSRD 1555
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 158 ELIYDGRSDSDRYKVVDDGSR 96
EL+Y D DR+ V+D G R
Sbjct: 262 ELVYPKLLDDDRFYVLDSGER 282
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 496 GSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGID 368
GSN S N+SN+ DN++ ND N+N+ N D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 451 GAIDNNHGLSNDFGFVNDNHGL 386
G ID N +S FGF+ N GL
Sbjct: 287 GIIDRNILVSRGFGFLKSNSGL 308
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -1
Query: 403 NDNHGLRDNGIDTGSGDNRGRASLVDVQNDLHERSAVSN 287
ND D D GS + RASL QN +S N
Sbjct: 18 NDTQSESDLSFDHGSSEKLNRASLPKTQNSAIPQSNALN 56
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 496 GSNGS-NVSNLDRLGDGAIDNNHGLSNDFGFVNDNHGLRDNGID 368
GSN S N+SN+ DN++ ND N+N+ N D
Sbjct: 509 GSNSSSNISNVANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDD 552
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = -3
Query: 137 SDSDRYKVVDDGSRSGNAGXHQALSRAGDSNGHHGSEGQEEFHSF 3
++ Y +D S + G H ++ + E +EEFH F
Sbjct: 160 TEDPSYGHSEDSEVSDDTGDHGSVDELESEREGNSGEEEEEFHGF 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,882
Number of Sequences: 5004
Number of extensions: 37900
Number of successful extensions: 144
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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