Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0767
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 92 4e-20
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 92 4e-20
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 2.0
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 2.7
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 8.1
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 8.1
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.1
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 8.1
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 92.3 bits (219), Expect = 4e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3
Query: 3 IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
I+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 51 IRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYR 110
Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
+ KID+HLYH+LY++AKGN FK+
Sbjct: 111 ESGKIDKHLYHTLYLEAKGNTFKH 134
Score = 32.3 bits (70), Expect = 0.040
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 227 EGEG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
E +G + +R L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 92.3 bits (219), Expect = 4e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3
Query: 3 IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
I+KP +HSR R+RK A+R GRH G+GKR+GTA ARMP +W
Sbjct: 51 IRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYR 110
Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
+ KID+HLYH+LY++AKGN FK+
Sbjct: 111 ESGKIDKHLYHTLYLEAKGNTFKH 134
Score = 32.3 bits (70), Expect = 0.040
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 227 EGEG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
E +G + +R L+E+I R KAE RTK++ +Q
Sbjct: 126 EAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.0
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -3
Query: 400 FLLLGGNT-----FLAALACLLYFIAAGL 329
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 132 VPSVAYAHWQYLFSYQS 82
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 24.6 bits (51), Expect = 8.1
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Frame = -3
Query: 388 GGNTFLAALACLLYFIA------AGLSLVAKHLRPGLLSLLPVDVLHEHTLFLNTLPFAF 227
GG F + L C L ++ + ++AKH R L DV+ + LPF F
Sbjct: 573 GGVLFFSILFCALQSLSEIANMFSQRPIIAKH-RASALYHPAADVISS---LIVDLPFRF 628
Query: 226 M*SEWYRCLSIFLAVLYFRSNFLRT 152
+ +S+F VLYF +N RT
Sbjct: 629 I------NISVFSIVLYFLTNLKRT 647
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 370 AALACLLYFIAAGLSLVAKHLRPGLLSLLP 281
A L CLL IAA L+ H+ P L LLP
Sbjct: 626 AKLLCLL--IAAAPRLIESHVEPILQILLP 653
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 96 FSYQSHSDDPFYVPLCFCGHGR 31
FS + +D+P Y P+ CG G+
Sbjct: 37 FSQCAITDEPLYPPIVSCGLGK 58
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 433 GFVFSSEGLQQFLLLGGNTFLAA 365
G VFS + L +F+ GGN F+ A
Sbjct: 83 GPVFSPKSLLEFVQSGGNLFVVA 105
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -3
Query: 289 LLPVDVLHEHTLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLRTLCLCTHSS 128
+LP+ + E LFLN F M + L L+ S+ + LC + S
Sbjct: 157 VLPLSTIPESILFLNESSFVIMSRRGIDAFKLDLTSLFSFSSKSQLNALCLYQS 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,043
Number of Sequences: 5004
Number of extensions: 34177
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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