Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0767
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   102   1e-22
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   102   1e-22
03_02_0050 + 5272471-5274861                                           29   2.0  
04_04_1687 - 35365766-35366356,35367137-35368135                       29   2.6  
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    28   3.5  
07_03_1498 + 26995209-26995752,26995945-26996513                       27   6.1  
02_03_0297 - 17408902-17409045,17409134-17409304,17410563-174106...    27   6.1  

>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  102 bits (245), Expect = 1e-22
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
           IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW               
Sbjct: 51  IKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYR 110

Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
            AKKID+H+YH +YMK KGN+FKN
Sbjct: 111 EAKKIDKHMYHDMYMKVKGNMFKN 134



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 233 EG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
           +G   + +RVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  102 bits (245), Expect = 1e-22
 Identities = 45/84 (53%), Positives = 56/84 (66%)
 Frame = +3

Query: 3   IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
           IKKP  +HSR+R R+  EA++KGRH G+GKRRGT  AR+P K LW               
Sbjct: 51  IKKPQKIHSRSRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYR 110

Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
            AKKID+H+YH +YMK KGN+FKN
Sbjct: 111 EAKKIDKHMYHDMYMKVKGNMFKN 134



 Score = 39.5 bits (88), Expect = 0.001
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = +2

Query: 233 EG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
           +G   + +RVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNMFKNKRVLMESIHKSKAEKAREKTLSDQ 158


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 397 LLLGGNTFLAALACLLYFIAAGLSLVAKHLRPGLLSLLPVDVL-HEHTLFLNTLP 236
           LLL     L+  +CL   +     L  +HL P LLS +P+D L H H   L  LP
Sbjct: 79  LLLAYRRHLSPPSCLPSLVPLLPVLPYRHLLPLLLSFVPLDPLRHLHRHLLAHLP 133


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   HQETCSSPLPRPCPQKHR 55
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 324 WSLSIFVLAFSAFFLWMYSMSTRCS*TH 241
           W+ + F + F  F LWM ++ T C   H
Sbjct: 227 WNWAYFSIQFPCFILWMSTIRTMCLSNH 254


>07_03_1498 + 26995209-26995752,26995945-26996513
          Length = 370

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 331 LSLVAKHLRPGLLSLLPVDVLHEHTLFLNTLP 236
           L+L+  +  PG +SLL +D L  H LF  T P
Sbjct: 8   LNLIVDNRFPGAVSLLSID-LRRHKLFNTTTP 38


>02_03_0297 -
           17408902-17409045,17409134-17409304,17410563-17410664,
           17412605-17412718,17413095-17413178,17413669-17413808,
           17414429-17414560,17415430-17415618,17415736-17415801,
           17415905-17415938
          Length = 391

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 371 RGACVPPLLYCGGP 330
           +GACV P+ YCG P
Sbjct: 152 KGACVDPVAYCGTP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,982,961
Number of Sequences: 37544
Number of extensions: 261092
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)