Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0767
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              116   1e-26
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   2.7  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   3.6  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   3.6  
SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)       27   6.3  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  116 bits (279), Expect = 1e-26
 Identities = 55/84 (65%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
           IKKP  VHSRARVRK  EAR KGRH G GKR+GTANARMPQK +W               
Sbjct: 79  IKKPEIVHSRARVRKADEARSKGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYR 138

Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
            AKKID H+YHSLYMK+KGNVFKN
Sbjct: 139 EAKKIDNHMYHSLYMKSKGNVFKN 162



 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 27/70 (38%), Positives = 38/70 (54%)
 Frame = +2

Query: 227 EGEG*CVQEQRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLL 406
           + +G   + +RVLMEYIH+KKAEKAR+K+LSDQ                         +L
Sbjct: 154 KSKGNVFKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKDML 213

Query: 407 QTFAREDEAA 436
             +A+E+EAA
Sbjct: 214 SAYAKEEEAA 223


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 30  RARVRKNTEARRKGRHCGFGKRRGTANAR 116
           +A  RK    RR+ R  G  K+R TANAR
Sbjct: 17  KANSRKKRRRRRRPRLTGLSKQRQTANAR 45


>SB_35269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 159 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 37
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 159 LEPFVFVPIVPSVAY--AHWQYLFSYQSHSDDPFYVPLCFCGH 37
           ++ + F+P    V +    W++  ++  H+DDPF V    C H
Sbjct: 72  IKDYSFLPCCFKVCHRTCFWRWAHNHSIHADDPFEVACPHCRH 114


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -3

Query: 400 FLLLGGNTFLAALAC 356
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 384 PPRRRNCCRPSLEKTKPRLPLRSK 455
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


>SB_20414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 207 DACQSSWQFCTSGAIFLEPF-VFVPIVPSVAYAHW 106
           D  + S Q C     FLEP  VF P+ PS A+AH+
Sbjct: 192 DIVEKSQQACREHEAFLEPMGVFSPLPPS-AHAHF 225


>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
          Length = 1206

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 222 RVSGIDACQSSWQFCTSGAIFLEPFVF 142
           RV+G+    S WQ CT+ A  L+  VF
Sbjct: 493 RVAGVKKSPSRWQQCTNAANNLDGLVF 519


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,165
Number of Sequences: 59808
Number of extensions: 279114
Number of successful extensions: 814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)