Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0767
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   112   1e-25
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    31   0.45 
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   3.2  
AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine re...    28   3.2  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   9.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  112 bits (269), Expect = 1e-25
 Identities = 51/84 (60%), Positives = 59/84 (70%)
 Frame = +3

Query: 3   IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
           I+KPV VHSR R R+  EARRKGRH G+GKRRGTANARMP+K LW               
Sbjct: 51  IRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYR 110

Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
            AKK+D+HLYH LY++AKGN FKN
Sbjct: 111 DAKKLDKHLYHELYLRAKGNNFKN 134



 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 248 QEQRVLMEYIHRKKAEKARTKMLSDQ 325
           + ++ L+EYI +KK E  R K L+DQ
Sbjct: 133 KNKKNLIEYIFKKKTENKRAKQLADQ 158


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 351 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 455
           RRHAS     +PP   NC +P+ ++T+  + L ++
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 398 PPSWRQYVPRGACVPPL 348
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 372 RNVLPPRRRNCCRPSLEKTKPRLP 443
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>AF022979-7|AAB69903.1|  295|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 53 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
 Frame = -3

Query: 361 ACLLYFIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLFLNTLP-----------FAFM*SE 215
           A L+ F+   LS V+KH       ++ +D++     ++NT P           FA    E
Sbjct: 16  AILMIFMIVLLS-VSKHFTNSFYRVITMDIILNLLCWVNTWPSRMVFREDGFGFARFLYE 74

Query: 214 WYRC---LSIFLAVLYFRSNFLRTLCLCTH 134
           +Y     +S FL+ ++F      T+C+C H
Sbjct: 75  FYNKSFDVSFFLSNVFFHVQSASTICICCH 104


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -1

Query: 189 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 31
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 234 SPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 142
           SPSC    +  C  S  FC+  + F+E   F
Sbjct: 330 SPSCHPHILSICSCSTTFCSKCSAFIEQLEF 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,506,468
Number of Sequences: 27780
Number of extensions: 206580
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)