Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0767
(489 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 103 9e-23
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 100 5e-22
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 97 4e-21
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 31 0.32
At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2) ... 29 1.7
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 28 3.9
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 3.9
At5g67310.1 68418.m08488 cytochrome P450 family protein 27 5.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 27 5.1
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 27 5.1
At3g22940.1 68416.m02890 F-box family protein-related contains T... 27 9.0
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 103 bits (246), Expect = 9e-23
Identities = 45/84 (53%), Positives = 55/84 (65%)
Frame = +3
Query: 3 IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
I+KP +HSR+R R EA+RKGRH G+GKR+GT AR+P K LW
Sbjct: 51 IRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYR 110
Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
+KKIDRH+YH +YMK KGNVFKN
Sbjct: 111 ESKKIDRHMYHDMYMKVKGNVFKN 134
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/31 (58%), Positives = 23/31 (74%)
Frame = +2
Query: 233 EG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
+G + +RVLME IH+ KAEKAR K L+DQ
Sbjct: 128 KGNVFKNKRVLMESIHKMKAEKAREKTLADQ 158
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 100 bits (240), Expect = 5e-22
Identities = 44/84 (52%), Positives = 54/84 (64%)
Frame = +3
Query: 3 IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
I+KP +HSR+R R+ A+RKGRH G+GKR+GT AR+P K LW
Sbjct: 51 IRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYR 110
Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
KKIDRH+YH +YMK KGNVFKN
Sbjct: 111 ETKKIDRHMYHDMYMKVKGNVFKN 134
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 233 EG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
+G + +RVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 97.5 bits (232), Expect = 4e-21
Identities = 42/84 (50%), Positives = 53/84 (63%)
Frame = +3
Query: 3 IKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXX 182
I+KP +HSR+R RK A+ KGRH G+GKR+GT AR+P K LW
Sbjct: 51 IRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYR 110
Query: 183 TAKKIDRHLYHSLYMKAKGNVFKN 254
KKID+H+YH +YM+ KGNVFKN
Sbjct: 111 ETKKIDKHMYHDMYMRVKGNVFKN 134
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/31 (61%), Positives = 23/31 (74%)
Frame = +2
Query: 233 EG*CVQEQRVLMEYIHRKKAEKARTKMLSDQ 325
+G + +RVLME IH+ KAEKAR K LSDQ
Sbjct: 128 KGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +3
Query: 189 KKIDRHLY-HSLYMKAKGNVFKN 254
KKID+ +Y H ++MK KG V+KN
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKN 51
>At1g07420.1 68414.m00791 sterol 4-alpha-methyl-oxidase 2 (SMO2)
identical to sterol 4-alpha-methyl-oxidase GI:16973471
from [Arabidopsis thaliana]; identical to cDNA sterol
4-alpha-methyl-oxidase GI:16973470
Length = 266
Score = 29.1 bits (62), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 346 FIAAGLSLVAKHLRPGLLSLLPVDVLHEHTLFLNTLPFAFM 224
F+ +G + H L+ + +LHE FL+ LPF F+
Sbjct: 4 FVESGWQYLVTHFSDFQLACIGSFLLHESVFFLSGLPFIFL 44
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = -1
Query: 324 WSLSIFVLAFSAFFLWMYSMSTR 256
W +S+ ++AFS FF+++Y+ S +
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVK 1399
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 6 KKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 110
KK + + + ++RKN + RR+G G G RR A+
Sbjct: 82 KKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g67310.1 68418.m08488 cytochrome P450 family protein
Length = 507
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 243 HYPSPSCRVSGIDACQSSWQFCTSGAIFLEPFVF 142
H S C V+G D + +W F + AI +P V+
Sbjct: 382 HASSTDCEVAGFDIPRRTWLFINAWAIQRDPNVW 415
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 27 SRARVRKNTEARRKGRHCGFGKRRGTANARMPQKEL 134
SR+R R + +R +GR + R + ++ P+K+L
Sbjct: 209 SRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDL 244
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 343 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTL 254
IA L KHL+P L+SL+P V H EH L
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPL 1004
>At3g22940.1 68416.m02890 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 412
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 61 VERVVTVALVREEVLPMRVCH 123
++ VVT+A VREE L VCH
Sbjct: 246 LDGVVTLACVREEKLAALVCH 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,906,278
Number of Sequences: 28952
Number of extensions: 193239
Number of successful extensions: 585
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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