Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0766
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.8  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    26   2.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    24   8.6  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 359 SRQLPDASCVYGYGVIGKNS*IKTSFIIKEAFFFNIFILYPTCRI 225
           S+   DA+C+Y   +   +  IK   ++KE  F      +P  +I
Sbjct: 292 SKDARDAACLYALKIAKDSKIIKNLDLVKEHAFVKTLFKHPDIKI 336


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 353 QLPDASCVYGYGVIGKNS*IKTSFIIKEAF 264
           Q+P+A CVYG+ ++ +N   +T  ++ + +
Sbjct: 151 QIPEARCVYGFQIMIENIHSETYSLLLDTY 180


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 276 NYKRSFNLTIFSDNSIT 326
           NY+R  N+T+  DN+IT
Sbjct: 73  NYERYLNVTLTHDNNIT 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,297
Number of Sequences: 5004
Number of extensions: 27322
Number of successful extensions: 56
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)