Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0766
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          30   0.92 
SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)               27   4.9  
SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15)                   27   4.9  
SB_45313| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15)                   27   4.9  
SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)                     27   8.6  
SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               27   8.6  

>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 83  FCVRVKPCCKIPCYRQATCIYLCNAVLNNQY 175
           +C  +  C + PC  QATC+ + NA L + Y
Sbjct: 165 YCEELNSCLRSPCQNQATCLDI-NAGLRDAY 194


>SB_46333| Best HMM Match : EGF (HMM E-Value=1.10001e-40)
          Length = 580

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 92  RVKPCCKIPCYRQATC 139
           +VKPC  IPC   ATC
Sbjct: 78  QVKPCDTIPCKNNATC 93



 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RVKPCCKIPCYRQATCI 142
           +VKPC   PC   ATCI
Sbjct: 118 QVKPCDSSPCKNNATCI 134


>SB_28272| Best HMM Match : EGF (HMM E-Value=2.6e-15)
          Length = 157

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  RVKPCCKIPCYRQATC 139
           RVKPC   PC   ATC
Sbjct: 76  RVKPCDSSPCQNNATC 91


>SB_45313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = +2

Query: 62  RFIRGAF-FCVRVKPCCKIPCYRQ-----ATCIYLCNAVLNNQY 175
           R I   F FCV V    +IP Y Q     ATC Y+C  V    Y
Sbjct: 25  RIIESGFTFCVGVPRNSRIPSYEQATIAWATCDYICVCVSRVTY 68


>SB_37171| Best HMM Match : EGF (HMM E-Value=2.6e-15)
          Length = 186

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  RVKPCCKIPCYRQATC 139
           RVKPC   PC   ATC
Sbjct: 76  RVKPCDSSPCQNNATC 91


>SB_6318| Best HMM Match : RVT_1 (HMM E-Value=0.72)
          Length = 485

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 306 FSDNSITINARRIRQLST 359
           FSD S T N+RRIR+ +T
Sbjct: 77  FSDKSFTTNSRRIRKATT 94


>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 92  RVKPCCKIPCYRQATCIYLCNAVL 163
           RV  CC +PC     C   C AVL
Sbjct: 347 RVVLCCVVPCCVVLCCAVSCRAVL 370



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 95  VKPCCKIPCYRQATCIYLCNAVL 163
           V PCC + C     C+ LC  VL
Sbjct: 463 VVPCCVVLCCVVLYCVVLCRVVL 485


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,513,445
Number of Sequences: 59808
Number of extensions: 173159
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)