Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0765
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   2.0  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    26   4.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   4.5  

>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 455 ECWKS*CQIAIFDKLETNIADKLSIYIADKLETGIADK 342
           E + S C +  +  + TN+ D++S  I+  LE G++DK
Sbjct: 19  ESYASVCVMKKWPIIATNVIDEVSRNISKALEAGMSDK 56


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 491 KNIIGHVD*LSSECWKS*CQIAIFDK-LETNIADKLSIYIADKLETGIADKLSTD 330
           + I   VD L    W+   +  + +K L+  +ADK+  Y+  K +  + DKL  D
Sbjct: 240 RTISSAVDKLDKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKGDRSLLDKLEAD 294


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 608 YSITQKFACIQDKRYQIT-LVNAT 540
           YSI  K+ C QDK  +I  L+NA+
Sbjct: 130 YSILTKYRCAQDKEREIVGLINAS 153


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 259 YCSCSLMQRNLYLSVFTSHILSVISVDSLSAIPV---SSLSAIYIDSLSAILVSSLSKIA 429
           Y S  +   +  +S  +S I+S   V S S+ P+   SSL + Y  SLS I  SSLS  A
Sbjct: 666 YSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTA 725

Query: 430 I 432
           +
Sbjct: 726 M 726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,743
Number of Sequences: 5004
Number of extensions: 52701
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)