Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0765
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine re...    29   4.3  
AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in ...    29   4.3  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U80815-1|AAB37996.2|  100|Caenorhabditis elegans Hypothetical pr...    28   5.6  

>AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein31 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/112 (24%), Positives = 50/112 (44%)
 Frame = -1

Query: 382 YILLTN*RLVLLTSCQQILLTKYDS*TLINKGYVALMSNCNKIFIYLFLCISHLYNRKNV 203
           Y+L     +V+  SC  I ++K +   LI   Y +++    +  +  F  +   Y    +
Sbjct: 137 YVLCMCYSIVITLSCYSIRISKEEQWQLIQLNYPSMVPQFQR--LREFSIVRMTYELITL 194

Query: 202 *VLNSFHGHKYTLHTFLNGLTVRCKKVILLSCNTLTQSYFFYQKITLRNTLL 47
            VLN+    K TL   ++ L  R   V+ L  + L+++     KI L+  +L
Sbjct: 195 LVLNAVGTFKTTL--VISVLVFRMYNVLFLMQSQLSRTTLAKHKIALKCLVL 244


>AC006809-4|AAO25980.1|  339|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 4 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 278 CNVTFIYQCSRVIFCQ*YLLTACQQYQSLVCQQYILTACQQYWSLVCQK*Q 430
           C ++   QC +   CQ    T CQQ+   VCQQ     CQQ  +  CQ+ Q
Sbjct: 196 CTISSAPQCQQ---CQ----TTCQQFAP-VCQQQCAPQCQQPSAPQCQQCQ 238


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 320 CQ*YLLTACQQYQSLVCQQYILTACQQY 403
           CQ    + C Q Q   CQQ   T CQQ+
Sbjct: 527 CQPQCTSQCVQQQQCPCQQTCQTGCQQH 554


>U80815-1|AAB37996.2|  100|Caenorhabditis elegans Hypothetical
           protein W02C12.2 protein.
          Length = 100

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/69 (28%), Positives = 33/69 (47%)
 Frame = +2

Query: 362 LVCQQYILTACQQYWSLVCQK*QFDTKISNIHWKANLRGL*YSY*LNCKILIHTYIILSL 541
           L C   ++ A   Y S +      +T   N+HW   +  L +S  L C+IL   +IIL+ 
Sbjct: 16  LACFDTLIVAIFAYKSFIIL---METMNHNLHWTTVIAFLFFSMFLICEILGTIFIILAA 72

Query: 542 *RLLALFDI 568
            + +A + I
Sbjct: 73  QKKIARYCI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,035,010
Number of Sequences: 27780
Number of extensions: 283338
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)