Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0765
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   6.5  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 485 YSY*LNCKILIHTYIILSL*RLL 553
           +SY LNCK   H   +L L R L
Sbjct: 29  FSYLLNCKNYDHPTTLLKLKRYL 51


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 370 TN*RLVLLTSCQQILLTKYDS 308
           TN   VL  + QQ+L +KYD+
Sbjct: 357 TNTMYVLSDNFQQLLFSKYDA 377


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 256 FYCSCSLMQRNLYLSVFTSHILSVISVD 339
           F  + S + +NLY S  +SH L+ ++ +
Sbjct: 252 FGMALSPLTQNLYYSALSSHNLNYVNTE 279


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 17  IICKLVFLTRQQRVS*SYFLIKKIRLCKCVA 109
           ++C  VFL R+ R   +Y L+       CVA
Sbjct: 61  LVCVAVFLVRKLRRPCNYLLVSLAVSDLCVA 91


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 256 FYCSCSLMQRNLYLSVFTSHILSVISVD 339
           F  + S +  NLY S  TSH L  ++++
Sbjct: 255 FGMALSPVTNNLYYSPLTSHSLYYVNME 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,245
Number of Sequences: 438
Number of extensions: 3590
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)