Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0763
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 25  SVKKLQP-NLIPKVKMEVCNVIAKYEMQSFDKSNLN 129
           SV ++ P NLIP++  +   V+   E + FD+  ++
Sbjct: 37  SVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGVH 72


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -1

Query: 260 NL*YYLFQTYL 228
           N+ Y++FQTYL
Sbjct: 240 NIGYFVFQTYL 250


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 278 IYYIFSNL*YYLFQTYL 228
           ++ +   L YYLF TY+
Sbjct: 237 VFVLKRRLGYYLFHTYI 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,961
Number of Sequences: 438
Number of extensions: 1507
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)