Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0762
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   3.4  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   3.4  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   7.9  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 463 PPSACGRLHCAANVTRLVTSRINTFQSNRQQQTIYKLL 350
           PPS C R H + +   + T+ +N  Q +R      ++L
Sbjct: 746 PPSGCSRNHTSNSYKIIATNEMNRQQGSRDSYITSRML 783


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 240 INRGSCFFCLSETSIA 193
           +  GSCFFCLS  ++A
Sbjct: 342 VGPGSCFFCLSNPNVA 357


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +3

Query: 123  YAHVFNCHAFTLALSFYSISSWKSQ*KFHLNKKNMNLY*SKLITYNSTHSFNKETPKD 296
            Y H+F C      L++ S + WK   K    ++       +L   + TH  ++  PK+
Sbjct: 1233 YRHIFRCVPDDEMLTWESYNEWKKYGK-RFKEEQARWRQEELSNLHETHEKSENDPKN 1289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,437,303
Number of Sequences: 5004
Number of extensions: 44250
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)