Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0762
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       28   6.4  

>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 129 HVFNCHAFTLA-LSFYSISSWKSQ*KFHLNKKNMNLY*SKLITYNSTHSFNKETPKDHNS 305
           ++  C  F  A L  YS+  W ++     NK    L  S+      +H F+++   D N+
Sbjct: 283 YLIGCFLFVFATLVEYSLVLWLTKSYKKYNKAKEELSKSR----GKSHPFDEQYDGDRNT 338

Query: 306 DIRTLTLPHDITVFIK 353
            I  + +PH+  V ++
Sbjct: 339 QIALMDMPHENDVVVE 354


>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 436 NEVGHKHSVGVAQSISMSETAFELYKRLQ 522
           N + H+H+V  A+ + + + AFEL + +Q
Sbjct: 342 NPISHRHAVKSAEPLPLEDDAFELPEEIQ 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,924,427
Number of Sequences: 59808
Number of extensions: 318586
Number of successful extensions: 624
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)