Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0762
(702 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92910-1|CAB07442.1| 348|Homo sapiens HFE protein. 31 4.0
Y09801-1|CAA70934.1| 348|Homo sapiens HFE protein. 31 4.0
U91328-2|AAB82083.1| 348|Homo sapiens hereditary hemochromatosi... 31 4.0
U60319-1|AAC51823.1| 348|Homo sapiens haemochromatosis protein ... 31 4.0
BC117203-1|AAI17204.1| 348|Homo sapiens hemochromatosis protein. 31 4.0
BC117201-1|AAI17202.1| 348|Homo sapiens hemochromatosis protein. 31 4.0
AY205604-1|AAO47091.1| 268|Homo sapiens hemochromatosis protein. 31 4.0
AJ249336-1|CAC67793.1| 260|Homo sapiens hemochromatosis protein... 31 4.0
AJ249335-1|CAC67792.1| 325|Homo sapiens hemochromatosis protein... 31 4.0
AF144241-1|AAG29576.1| 116|Homo sapiens hemochromatosis splice ... 31 4.0
AF144240-1|AAG29575.1| 165|Homo sapiens hemochromatosis splice ... 31 4.0
AF115265-1|AAG29572.1| 348|Homo sapiens hemochromatosis termina... 31 4.0
AF079408-1|AAC62647.1| 260|Homo sapiens hemochromatosis splice ... 31 4.0
>Z92910-1|CAB07442.1| 348|Homo sapiens HFE protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>Y09801-1|CAA70934.1| 348|Homo sapiens HFE protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>U91328-2|AAB82083.1| 348|Homo sapiens hereditary hemochromatosis
protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>U60319-1|AAC51823.1| 348|Homo sapiens haemochromatosis protein
protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>BC117203-1|AAI17204.1| 348|Homo sapiens hemochromatosis protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>BC117201-1|AAI17202.1| 348|Homo sapiens hemochromatosis protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>AY205604-1|AAO47091.1| 268|Homo sapiens hemochromatosis protein.
Length = 268
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 73 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 132
>AJ249336-1|CAC67793.1| 260|Homo sapiens hemochromatosis protein
protein.
Length = 260
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 65 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 124
>AJ249335-1|CAC67792.1| 325|Homo sapiens hemochromatosis protein
protein.
Length = 325
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 130 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 189
>AF144241-1|AAG29576.1| 116|Homo sapiens hemochromatosis splice
variant 861-2305del protein.
Length = 116
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 43 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 102
>AF144240-1|AAG29575.1| 165|Homo sapiens hemochromatosis splice
variant 1043-2283del,intron6ins protein.
Length = 165
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 42 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 101
>AF115265-1|AAG29572.1| 348|Homo sapiens hemochromatosis
termination variant terE6 protein.
Length = 348
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 153 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 212
>AF079408-1|AAC62647.1| 260|Homo sapiens hemochromatosis splice
variant delE2 protein.
Length = 260
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -2
Query: 479 IDWATPTECLWPTSLRG*RHAVSDVTNKYLSKQQATANYLQAFNEHRNIMRQRERPNIRV 300
+DW WPT L RH + N+ ++ A Q R ++ Q+ P ++V
Sbjct: 65 LDWRAAEPRAWPTKLEWERHKIRARQNRAYLERDCPAQLQQLLELGRGVLDQQVPPLVKV 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,200,566
Number of Sequences: 237096
Number of extensions: 1488292
Number of successful extensions: 1903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1903
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -