Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0761
(783 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 138 5e-33
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 137 9e-33
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 136 1e-32
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 134 6e-32
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 126 1e-29
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 5e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 62 5e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 5e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 62 5e-10
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 62 5e-10
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 60 2e-09
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 60 2e-09
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 60 2e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 59 4e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 59 4e-09
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 59 4e-09
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 58 5e-09
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 58 7e-09
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 58 7e-09
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 58 7e-09
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 58 7e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 56 2e-08
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 56 3e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 56 3e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 55 5e-08
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 53 2e-07
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 52 3e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 52 6e-07
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 51 8e-07
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 51 1e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 51 1e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 50 1e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 50 2e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 50 2e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 49 3e-06
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 49 4e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 47 1e-05
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 47 1e-05
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 46 2e-05
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 46 2e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 46 2e-05
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 46 2e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 46 3e-05
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 46 3e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 7e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 9e-05
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 44 1e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 44 1e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 44 2e-04
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 6e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 41 8e-04
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 41 0.001
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 41 0.001
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 41 0.001
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 41 0.001
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 40 0.002
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 38 0.006
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 38 0.008
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 37 0.017
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 36 0.040
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.092
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 34 0.12
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 33 0.16
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.37
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 32 0.49
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 32 0.49
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 32 0.49
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 31 0.65
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 31 0.65
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 30 1.5
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 30 1.5
At4g37020.1 68417.m05244 expressed protein 30 2.0
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 29 2.6
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 3.5
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 28 8.0
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 8.0
At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3... 28 8.0
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 138 bits (333), Expect = 5e-33
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++R FM PVRILV+++ELTLEGIKQFY+ +E EEWKLETLCDLY+TL+I Q+VIF NT
Sbjct: 228 EITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT 287
Query: 181 RRKVDWLTESMHLRDFTVSAMHGDM 255
RRKVDWLT+ M RD TVSA HGDM
Sbjct: 288 RRKVDWLTDKMRSRDHTVSATHGDM 312
Score = 102 bits (244), Expect = 3e-22
Identities = 52/93 (55%), Positives = 61/93 (65%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXX 434
DQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 313 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRF 372
Query: 435 XXXXXXXNFVTEADRRALKDIEDFYTLVSLKCP 533
NFVT D R L DI+ FY +V + P
Sbjct: 373 GRKGVAINFVTRDDERMLFDIQKFYNVVVEELP 405
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 137 bits (331), Expect = 9e-33
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++R FM PVRILV+++ELTLEGIKQFY+ ++ EEWKLETLCDLY+TL+I Q+VIF NT
Sbjct: 230 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNT 289
Query: 181 RRKVDWLTESMHLRDFTVSAMHGDM 255
RRKVDWLT+ M RD TVSA HGDM
Sbjct: 290 RRKVDWLTDKMRSRDHTVSATHGDM 314
Score = 101 bits (241), Expect = 7e-22
Identities = 50/93 (53%), Positives = 61/93 (65%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXX 434
DQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 315 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRF 374
Query: 435 XXXXXXXNFVTEADRRALKDIEDFYTLVSLKCP 533
NF+T D R + DI+ FY +V + P
Sbjct: 375 GRKGVAINFMTSEDERMMADIQRFYNVVVEELP 407
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 136 bits (330), Expect = 1e-32
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++R FM PVRILV+++ELTLEGIKQFY+ +E E+WKLETLCDLY+TL+I Q+VIF NT
Sbjct: 228 EITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNT 287
Query: 181 RRKVDWLTESMHLRDFTVSAMHGDM 255
RRKVDWLT+ M RD TVSA HGDM
Sbjct: 288 RRKVDWLTDKMRSRDHTVSATHGDM 312
Score = 101 bits (242), Expect = 5e-22
Identities = 52/93 (55%), Positives = 62/93 (66%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXX 434
DQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY
Sbjct: 313 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRF 372
Query: 435 XXXXXXXNFVTEADRRALKDIEDFYTLVSLKCP 533
NFVT D+R L DI+ FY +V + P
Sbjct: 373 GRKGVAINFVTLDDQRMLFDIQKFYNVVVEELP 405
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 134 bits (324), Expect = 6e-32
Identities = 58/85 (68%), Positives = 75/85 (88%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++ FM +PV+ILV+++ELTLEGIKQF++A+E EEWK +TLCDLYDTL+I QAVIFCNT
Sbjct: 224 EMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 283
Query: 181 RRKVDWLTESMHLRDFTVSAMHGDM 255
+RKVD+L+E M +FTVS+MHGDM
Sbjct: 284 KRKVDYLSEKMRSHNFTVSSMHGDM 308
Score = 93.1 bits (221), Expect = 2e-19
Identities = 46/85 (54%), Positives = 56/85 (65%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q+ER+ IM +FR+G SRVLITTD+ ARGIDVQQVS VINYDLP+NRE Y
Sbjct: 310 QKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 369
Query: 438 XXXXXXNFVTEADRRALKDIEDFYT 512
NFV D + L+DIE +Y+
Sbjct: 370 RKGVAINFVKSDDIKILRDIEQYYS 394
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 126 bits (305), Expect = 1e-29
Identities = 55/84 (65%), Positives = 69/84 (82%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++ FM DPVRILV+ +ELTLEGIKQ+Y+ ++ EEWK +TLCDLY L+I QA+IFCNT
Sbjct: 211 EMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNT 270
Query: 181 RRKVDWLTESMHLRDFTVSAMHGD 252
R+KVDWLTE M +F VS+MHGD
Sbjct: 271 RQKVDWLTEKMRSSNFIVSSMHGD 294
Score = 79.0 bits (186), Expect = 3e-15
Identities = 42/84 (50%), Positives = 51/84 (60%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q+ER+ IM QFR+ SRVLI +D+ ARGIDVQ VS VINYD+P+N E Y
Sbjct: 297 QKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFG 356
Query: 438 XXXXXXNFVTEADRRALKDIEDFY 509
NFV +D + LKDIE Y
Sbjct: 357 REGVAINFVKSSDMKDLKDIERHY 380
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +3
Query: 234 ICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 413
IC Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 414 XXXXXXXXXXXXXXNFVTEA-DRRALKDIEDFYTLVSLKCPVMWPTSSKAPT 566
FV A D L +++ + + + P TS+ P+
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +3
Query: 234 ICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 413
IC Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 233 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 292
Query: 414 XXXXXXXXXXXXXXNFVTEA-DRRALKDIEDFYTLVSLKCPVMWPTSSKAPT 566
FV A D L +++ + + + P TS+ P+
Sbjct: 293 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 344
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Frame = +3
Query: 234 ICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 413
IC Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y
Sbjct: 316 ICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHR 375
Query: 414 XXXXXXXXXXXXXXNFVTEA-DRRALKDIEDFYTLVSLKCPVMWPTSSKAPT 566
FV A D L +++ + + + P TS+ P+
Sbjct: 376 VGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 61.7 bits (143), Expect = 5e-10
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Frame = +3
Query: 264 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXX 443
ERE + QFR G VLI TD++ARG+D + ++CVINYD P + Y
Sbjct: 418 ERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRS 477
Query: 444 XXXXNFVTEADRRALKDIEDFYTLVSLKCPV-MWPTSSK 557
F TE D L++I + T++S C V W S K
Sbjct: 478 GEAITFYTEQDVPFLRNIAN--TMMSSGCEVPSWIMSLK 514
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 1 EVSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
E++R M D VR+++ ++ E +KQ + EE KL L + +IF +
Sbjct: 330 ELARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQS 389
Query: 181 RRKVDWLTESMHLRDFTVSAMHGDM 255
+ + L + + + +H D+
Sbjct: 390 KERAKELYDELKCENIRAGVIHSDL 414
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 61.7 bits (143), Expect = 5e-10
Identities = 30/80 (37%), Positives = 43/80 (53%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q ER+ ++ QFR+G S VLI TD+ ARG+D++ + VINYD P+ E+Y
Sbjct: 715 QGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG 774
Query: 438 XXXXXXNFVTEADRRALKDI 497
F TE D + D+
Sbjct: 775 ATGVAFTFFTEQDWKYAPDL 794
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 154 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 252
++ +IFC+T+R D L S+ R F +HGD
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGD 712
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/49 (46%), Positives = 39/49 (79%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 441 QQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/49 (46%), Positives = 39/49 (79%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/49 (46%), Positives = 39/49 (79%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 444 QQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 492
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/81 (38%), Positives = 38/81 (46%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 404 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
Query: 438 XXXXXXNFVTEADRRALKDIE 500
N +T DR L IE
Sbjct: 464 HLGLAVNLITYEDRFNLYRIE 484
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +1
Query: 16 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 195
F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 325 FLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVE 382
Query: 196 WLTESMHLRDFTVSAMHGDMI 258
L + + ++ +H M+
Sbjct: 383 LLAKKITELGYSCFYIHAKML 403
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.8 bits (136), Expect = 4e-09
Identities = 31/81 (38%), Positives = 38/81 (46%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 404 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
Query: 438 XXXXXXNFVTEADRRALKDIE 500
N +T DR L IE
Sbjct: 464 HLGLAVNLITYEDRFNLYRIE 484
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/81 (34%), Positives = 47/81 (58%)
Frame = +1
Query: 16 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 195
F+ +P I + +ELTL+GI QFY +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 325 FLTNPYVINLM-DELTLKGITQFYAFVE-ERQKIHCLNTLFSKLQINQSIIFCNSVNRVE 382
Query: 196 WLTESMHLRDFTVSAMHGDMI 258
L + + ++ +H M+
Sbjct: 383 LLAKKITELGYSCFYIHAKML 403
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q ER+ ++ +FR+G S ++ TD+ ARG+DV+ V VINYD P + E+Y
Sbjct: 380 QAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAG 439
Query: 438 XXXXXXNFVTEADRRALKDI 497
F T A+ R K++
Sbjct: 440 AKGTAYTFFTVANARFAKEL 459
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 58.4 bits (135), Expect = 5e-09
Identities = 21/49 (42%), Positives = 36/49 (73%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER+ ++ +F++G S ++ TD+ ARG+DV+ + CV+NYD P+ E+Y
Sbjct: 446 QSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDY 494
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 4 VSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
++R F+RDP + ++ +L + I Q + E L L + ++ +IF T
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVET 419
Query: 181 RRKVDWLTESMHLRDFTVSAMHGD 252
+R D +T + + + A+HGD
Sbjct: 420 KRGCDQVTRQLRMDGWPALAIHGD 443
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/49 (46%), Positives = 36/49 (73%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 509 QAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVEDY 557
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 154 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 252
++ +IFC+T+R D L ++ R F +A+HGD
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGD 506
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/49 (46%), Positives = 36/49 (73%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 438 QPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 154 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 252
++ +IFC+T+R D LT ++ R F +A+HGD
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGD 435
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/49 (46%), Positives = 36/49 (73%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 438 QPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 154 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 252
++ +IFC+T+R D LT ++ R F +A+HGD
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGD 435
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 58.0 bits (134), Expect = 7e-09
Identities = 23/49 (46%), Positives = 36/49 (73%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E+Y
Sbjct: 438 QPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVEDY 486
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +1
Query: 154 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGD 252
++ +IFC+T+R D LT ++ R F +A+HGD
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGD 435
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.4 bits (130), Expect = 2e-08
Identities = 21/49 (42%), Positives = 39/49 (79%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q+EREV ++ F++G + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 454 QQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/74 (37%), Positives = 36/74 (48%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 397 QDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
Query: 438 XXXXXXNFVTEADR 479
N VT DR
Sbjct: 457 HLGLAVNLVTYEDR 470
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +1
Query: 52 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 231
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 387
Query: 232 VSAMHGDMI 258
+H M+
Sbjct: 388 CFYIHAKMV 396
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/74 (37%), Positives = 36/74 (48%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 397 QDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
Query: 438 XXXXXXNFVTEADR 479
N VT DR
Sbjct: 457 HLGLAVNLVTYEDR 470
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +1
Query: 52 EELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFT 231
++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+ L + + ++
Sbjct: 329 DQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYS 387
Query: 232 VSAMHGDMI 258
+H M+
Sbjct: 388 CFYIHAKMV 396
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 55.2 bits (127), Expect = 5e-08
Identities = 28/74 (37%), Positives = 35/74 (47%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 427 QDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 486
Query: 438 XXXXXXNFVTEADR 479
N VT DR
Sbjct: 487 HLGLAVNLVTYEDR 500
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/81 (29%), Positives = 46/81 (56%)
Frame = +1
Query: 16 FMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVD 195
+++ P I+ ++LTL G+ Q+Y +E E K+ L L+ L I Q++IFCN+ +V+
Sbjct: 348 YLKKPY-IINLMDQLTLMGVTQYYAFVE-ERQKVHCLNTLFSKLQINQSIIFCNSVNRVE 405
Query: 196 WLTESMHLRDFTVSAMHGDMI 258
L + + ++ +H M+
Sbjct: 406 LLAKKITELGYSCFYIHAKMV 426
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
DQ +RE + F+ G VL+ TD+ ++G+D + VINYD+P+ ENY
Sbjct: 432 DQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 481
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 52.4 bits (120), Expect = 3e-07
Identities = 26/81 (32%), Positives = 40/81 (49%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q +RE+ + FR VL+ TD++ RGID+ V+ VINYD+P + E Y
Sbjct: 612 QEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAG 671
Query: 438 XXXXXXNFVTEADRRALKDIE 500
+F+T D D++
Sbjct: 672 KSGVATSFLTLHDTEVFYDLK 692
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/82 (26%), Positives = 43/82 (52%)
Frame = +1
Query: 4 VSRCFMRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNTR 183
++R ++R+PV + + T + I Q I ++ E K L L D L A++F NT+
Sbjct: 528 LARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESE-KFFRLQKLLDELGEKTAIVFVNTK 586
Query: 184 RKVDWLTESMHLRDFTVSAMHG 249
+ D + +++ + V+ +HG
Sbjct: 587 KNCDSIAKNLDKAGYRVTTLHG 608
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 51.6 bits (118), Expect = 6e-07
Identities = 22/49 (44%), Positives = 33/49 (67%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q +RE + FR G+ +L+ TD+ ARG+DV V VI+Y+LP+N E +
Sbjct: 396 QAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETF 444
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +3
Query: 231 CICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 410
C+ DQ +RE + F+ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 803 CLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVH 862
Query: 411 XXXXXXXXXXXXXXXNFVTEADRRALKDI 497
F++E D + D+
Sbjct: 863 RVGRTGRAGRKGCAVTFISEDDAKYAPDL 891
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/50 (40%), Positives = 31/50 (62%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
DQ +R+ + F+ G VL+ TD+ ++G+D + VINYD+P ENY
Sbjct: 383 DQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENY 432
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q +RE + FR G +L+ TD+ ARG+DV V +I+Y+LP+N E +
Sbjct: 384 QSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETF 432
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q +R + +F+ G +L+ TD+ +RG+D+ V VINYD+P+N ++Y
Sbjct: 296 QSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDY 344
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = +3
Query: 147 VYCTSCNFLQHPSQGGLAH*IYASA*LYCICYAWRHDQREREVIMRQFRTGSSRVLITTD 326
V+CTS L+H S GL + C ++ QR R + +FR + +LI TD
Sbjct: 507 VFCTSVTDLRHIS--GLLKILGLDV---CTLFS-EMKQRARLKSIDRFRASENGILIATD 560
Query: 327 LLARGIDVQQVSCVINYDLPSNRENY 404
L+ARGID++ V +I+Y LP + E Y
Sbjct: 561 LVARGIDIKNVRTIIHYKLPHSAEVY 586
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 252 HDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXX 431
+ Q R + +F++G +L+ TD+ +RG+D+ V VINYD+P + +Y
Sbjct: 336 NSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTAR 395
Query: 432 XXXXXXXXNFVTEADRRALKDIED 503
+ +TE D + + IE+
Sbjct: 396 AGRGGLAVSIITETDVKLIHKIEE 419
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/47 (42%), Positives = 36/47 (76%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 398
+ +R+ I+++F+ ++VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 376 ESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/80 (25%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 MRDPVRILVQKEELTLEGIKQFYIAIELEEWKLETLCD-LYDTLSIAQAVIFCNTRRKVD 195
++DP ++ V++E+L L+ +KQ+ + E+ K+E + D + + I Q +IF T+
Sbjct: 295 VKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELGDIGQTIIFVKTKASAQ 354
Query: 196 WLTESMHLRDFTVSAMHGDM 255
+ +++ + V+++HG++
Sbjct: 355 KVHKALAEMGYDVTSVHGNL 374
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q +RE + FR G VL+ TD+ +RG+D+ V VI+Y+LP++ E +
Sbjct: 386 QHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +3
Query: 249 RHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R Q R + +FR S +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 371 RKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 422
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/91 (29%), Positives = 43/91 (47%)
Frame = +3
Query: 234 ICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXX 413
+CY DQ R++ + +FR + +LI TD+ ARGID+ + VIN+D P + +
Sbjct: 300 VCYG-DMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHR 358
Query: 414 XXXXXXXXXXXXXXNFVTEADRRALKDIEDF 506
+FVT D + D+ F
Sbjct: 359 VGRAARAGRTGCAYSFVTPEDMPYMLDLHLF 389
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 398
DQ R +++F++G VLI TD+ ARG+D++ + V+NYD+ + +
Sbjct: 508 DQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y
Sbjct: 384 EQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q ER + F+ GS +L+ TD+ ARG+D+ V VINY P E+Y
Sbjct: 402 QSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 46.4 bits (105), Expect = 2e-05
Identities = 17/46 (36%), Positives = 32/46 (69%)
Frame = +3
Query: 267 REVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R ++++F+ G +VL+T +L ARG+DV + V+N +LP++ +Y
Sbjct: 446 RSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHY 491
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +1
Query: 85 YIAIELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDM 255
Y I + K++TL L + F N R++ + + R + MHGD+
Sbjct: 385 YYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDL 441
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +3
Query: 249 RHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R Q R + +FR + +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 673 RKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 724
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 46.0 bits (104), Expect = 3e-05
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = +3
Query: 261 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXX 440
R +E + F++ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 441 XXXXXNFVTEADRRALKDI 497
F++E D + D+
Sbjct: 711 KGCAVTFISEDDAKYAPDL 729
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 240 YAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 386
Y+ +Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P
Sbjct: 358 YSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 406
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/80 (33%), Positives = 36/80 (45%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXX 437
Q +R + FR LI TD+ ARG+D+ V VINY P ++Y
Sbjct: 448 QAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAG 507
Query: 438 XXXXXXNFVTEADRRALKDI 497
FVT++DR LK I
Sbjct: 508 REGYAVTFVTDSDRSLLKVI 527
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +3
Query: 261 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXX 440
+ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 395 KERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGE 454
Query: 441 XXXXXNFVTEADRRALKDI 497
FV E DR D+
Sbjct: 455 KGTAIVFVNEDDRNLFPDL 473
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/79 (31%), Positives = 36/79 (45%)
Frame = +3
Query: 261 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXX 440
+ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 258 KERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGE 317
Query: 441 XXXXXNFVTEADRRALKDI 497
FV E DR D+
Sbjct: 318 KGTAIVFVNEDDRNLFPDL 336
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = +3
Query: 249 RHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R Q R + +FR +L+T+D+ ARG+D V+ V+ LP +RE Y
Sbjct: 345 RKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQY 396
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 392
DQ+ R+ + F SS VL+ TD+ ARG+D+ + V+ YD P +
Sbjct: 304 DQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQD 349
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 249 RHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 667 RKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 718
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.1 bits (92), Expect = 8e-04
Identities = 29/99 (29%), Positives = 42/99 (42%)
Frame = +3
Query: 207 IYASA*LYCICYAWRHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 386
I A + C Y H ER I+ FR + V + TD ARG+DV VS VI D
Sbjct: 443 ILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFA 501
Query: 387 SNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIED 503
S+ ++ + TEA+R ++ I +
Sbjct: 502 SSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIRE 540
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q +REV + FR G L+ T++ ARG+D+ V +I + P E Y
Sbjct: 382 QSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAY 430
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 267 REVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 380 RAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 267 REVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 223 RAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 268
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +3
Query: 249 RHDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 620 RKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 671
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
DQ +R QF + +L+ T++ ARG+D V ++ YD P N +Y
Sbjct: 435 DQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
DQ R F +L+ TD+ ARG+D+ V +I YD P Y
Sbjct: 369 DQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTEY 418
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 392
Q R+ + F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 314 QNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQD 358
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 36.7 bits (81), Expect = 0.017
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 386
+R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 557 RRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 4 VSRCFMRDPVRILVQKEELTL-EGIKQFYIAIELEEWKLETLCDLYDTLSIAQAVIFCNT 180
++R F+RDP + ++ +L + I Q + E L L + ++ +IF T
Sbjct: 360 LARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVET 419
Query: 181 RRKVDWLTESMHLRDFTVSAMHGD 252
+R D +T + + + A+HGD
Sbjct: 420 KRGCDQVTRQLRMDGWPALAIHGD 443
Score = 31.1 bits (67), Expect = 0.86
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGI 344
Q ER+ ++ +F++G S ++ TD+ ARG+
Sbjct: 446 QSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.092
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 380
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDV 350
DQ+ R+ + F SS VL+ TD+ ARG+D+
Sbjct: 277 DQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/46 (26%), Positives = 29/46 (63%)
Frame = +3
Query: 267 REVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
R ++++F+ RVL+T +LL G++ + +++ +LP++ +Y
Sbjct: 654 RSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAVHY 699
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 288 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 255 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
+QR + + G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 407 EQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDY 455
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +3
Query: 264 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 371
+RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 818 DREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +3
Query: 261 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
++R I F + RV++ T G+D V VI++ +P + E Y
Sbjct: 523 KDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGSMEEY 570
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 258 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQ-VSCVINYDLPSNRENYXXXXXXXXXX 434
Q +R + QF S VL TD+LARG+D + V V+ D P + +Y
Sbjct: 354 QEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARF 412
Query: 435 XXXXXXXNFVTEADRRALKDIED 503
F+T ++ + ++ +++
Sbjct: 413 YTQGKSLLFLTPSEEKMIEKLQE 435
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 31.5 bits (68), Expect = 0.65
Identities = 10/36 (27%), Positives = 25/36 (69%)
Frame = +3
Query: 264 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 371
++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 810 DKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = +3
Query: 330 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTEADRRALKDIEDF 506
+ RGID ++V VIN+D+P + Y + ++ + +DI+ F
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSF 454
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 285 QFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 383
+FR G +L+ T + G+D++Q + V+ +DL
Sbjct: 718 KFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/62 (25%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = +1
Query: 82 FYIAIELEEWKLETLCDLYDTLS---IAQAVIFCNTRRKVDWLTESMH-LRDFTVSAMHG 249
FY+A++ ++K+ET+ +L L V+ C++R ++D + S+ L +++A++
Sbjct: 23 FYLAVDRPQFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYS 82
Query: 250 DM 255
D+
Sbjct: 83 DL 84
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 261 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
++R + R+++TG R++ T GID V VI+ L E+Y
Sbjct: 465 KQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = +3
Query: 258 QREREVIMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 404
Q R M++F + +S L+ TD +RGID V V+ +D P + Y
Sbjct: 676 QESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEY 728
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -1
Query: 312 RHEKSQYE-TAS*SLHAHVDHVSMHSRYSKVTQMHRFSEPIHLATGVAENYSLCNRQC 142
R ++SQ + T S S H H+ +S H + + Q H+ + I+ + A +Y N QC
Sbjct: 1032 REDQSQQQHTPSPSKH-HMSSLS-HQFHQSIHQSHQHHQSIYQSQHAATHYPSQNHQC 1087
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 264 EREVIMRQFRTGSSRVLITTDLLARG 341
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At1g05200.1 68414.m00524 glutamate receptor family protein (GLR3.4)
plant glutamate receptor family, PMID:11379626
Length = 959
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 26 ILYAYLYRRKSLPWKVLNNFTLQLN*KNGSWKLCVTCMIHCLLHK 160
++ A + KS PW L FT+++ G + L V M+ L H+
Sbjct: 593 VVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHR 637
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,135
Number of Sequences: 28952
Number of extensions: 324202
Number of successful extensions: 801
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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