Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0756
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    27   2.8  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    27   3.7  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.9  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   8.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   8.5  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   8.5  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    25   8.5  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 126 WN-GYLMPVFTRNIPDPCFTSLAV-PISTRNPRQLFAVISASVLHDFRNV 269
           WN G+L      NIP+  F  L++ PI       LF  IS S LH FR++
Sbjct: 303 WNVGFLRYWTLNNIPNFLFALLSIIPILFA----LFYSISGSTLHSFRSI 348


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 625 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITV 506
           F+K+ KL  +K  I+G ++GA  A VT      KV ++ V
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKLVV 117


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 364 KEVNVSNSNAQAVFVDTRSVGVNNFNVLSIVCSQ 465
           +E ++S ++  ++FV   S  VN F+V S+  S+
Sbjct: 176 REKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 123 KWNGYLMPVFTRNIPDPCFTSL 188
           K +GY+ P+F   +P  CF SL
Sbjct: 374 KKSGYMQPLFDLTMPLGCFDSL 395


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 459 FPVVVRCFPNHEPKV*TVILAT--LPSKFLP 545
           +PVVV+C   H+P   T +L    L S F P
Sbjct: 36  YPVVVKCIQEHDPVDTTNVLVADDLDSNFEP 66


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 542 KKFGRQSSKNYGLDLR 495
           KKFG+++ KN G+D R
Sbjct: 72  KKFGKEAGKNSGVDAR 87


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 346 DKTAVDKEVNVSNSNAQAV--FVDTRSVGVNNFN 441
           DK    K+  V NSN +++  F    ++G+N+FN
Sbjct: 72  DKKTEFKQDEVPNSNGKSIPTFHPCNNIGINDFN 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,064
Number of Sequences: 5004
Number of extensions: 58969
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)