Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0756
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    31   0.72 
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304...    31   0.72 
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    29   2.9  
10_02_0173 + 6191676-6191764,6192147-6192260,6192411-6192638,619...    28   6.7  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 667 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 515
           A +A   +   IA +LKN KL ++++ +    L   +A +    + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455


>10_08_0943 + 21728294-21728675,21728767-21728840,21729469-21730443,
            21730617-21730683,21730765-21730827,21731001-21731064,
            21731162-21731255,21731352-21731435,21731523-21731612,
            21731708-21731735,21732117-21732596,21732679-21732740,
            21732820-21732929,21733014-21733101,21733228-21733557,
            21733782-21733904
          Length = 1037

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +3

Query: 144  PVFTRNIPDPCFTSLAVPISTRNPRQLFAVISASVLHDFRNVCHA*LLQQKLHKRDCGYI 323
            P F ++IPD  F  +   +S  NPR       A ++HDF   CH  + Q +L +R     
Sbjct: 911  PEFFKSIPDSLFDLVDKCLSV-NPRCRITSEDA-LMHDFFAPCHDLIRQHRLARRPAPSN 968

Query: 324  SYSCSP 341
            +  C P
Sbjct: 969  NLPCLP 974


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 420 GSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 283
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


>10_02_0173 +
           6191676-6191764,6192147-6192260,6192411-6192638,
           6192898-6193183,6193350-6193500,6193615-6193811
          Length = 354

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 91  ENFVLSFVGITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYLRLSPLLCCTISVMF 270
           EN+    V   NG+ T      G + TH +   +Y F++       + +PLLC  I+V  
Sbjct: 111 ENYCSQHVFTFNGVDTDGTVTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVYS 170

Query: 271 AM 276
            M
Sbjct: 171 PM 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,581,996
Number of Sequences: 37544
Number of extensions: 390153
Number of successful extensions: 907
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)