Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0756
         (739 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  58   7e-09
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      52   5e-07
SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)                  51   1e-06
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            49   3e-06
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   3.0  
SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)                     28   6.9  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   28   9.1  

>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
 Frame = -1

Query: 718 NVIVVDWSSFS--LSTYSTAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNLGAHV 557
           NVI VDW S +  L+ Y  A      VG+ +A  +  ++      L +VH++G +LGAHV
Sbjct: 55  NVITVDWQSGADGLNLYHVAAGNTRVVGAQLAELITTIQRVFDFDLRRVHLIGHSLGAHV 114

Query: 556 AGVTGRNLEGKVARIT 509
           AG  G  L GKV RIT
Sbjct: 115 AGYAGERLSGKVGRIT 130


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
 Frame = -1

Query: 736 LRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLK----LPLNKVHIVGFNL 569
           L  G++NVI+VDW   +   ++ AV     VG+  A  L+ L+      L  VH++GF+ 
Sbjct: 139 LWEGDFNVIIVDWMRGAWFPFTRAVANTRLVGAQTARLLQILEERSGRKLAYVHVIGFSF 198

Query: 568 GAHVAGVTGRNLE 530
           GAHVAG  GR ++
Sbjct: 199 GAHVAGYVGRRMK 211



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
 Frame = -2

Query: 471 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTN--------NLCS 316
           +RL T+DA +V+VIHT        G+   IGH DF+ NG   QPGC N          C 
Sbjct: 237 VRLDTSDALFVDVIHTSAD----YGITSTIGHADFYPNGGKKQPGCDNFFRGFSSYLFCG 292

Query: 315 HNRAYEVFAATI 280
           H RA  +F  ++
Sbjct: 293 HKRAPALFTTSL 304


>SB_43904| Best HMM Match : Lipase (HMM E-Value=5e-07)
          Length = 408

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
 Frame = -2

Query: 471 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGC-------TNNL-CS 316
           +RL  +DA++V+V+HTD   ++  G     GHIDF+ NG   QPGC       +N L C 
Sbjct: 16  VRLDPSDAEFVDVMHTD---MDFAGTSTQSGHIDFYPNGGKNQPGCRDIADGPSNALKCD 72

Query: 315 HNRAYEVFAATIT 277
           H RA++ F  +IT
Sbjct: 73  HVRAHDYFTESIT 85


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
 Frame = -2

Query: 471 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNL--------CS 316
           +RL  +DA +V+V+HTD   ++  G     GHIDF+ NG   QPGC + L        C 
Sbjct: 735 VRLDPSDADFVDVMHTD---MDLAGTPTVSGHIDFYPNGGKKQPGCRDLLDGPINYVICD 791

Query: 315 HNRAYEVFAATIT 277
           H RA E +A ++T
Sbjct: 792 HMRAPEYYAESVT 804



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -1

Query: 736 LRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKV----HIVGFNL 569
           ++  + NVI  DWS  +   Y  A      VG+ I   +K L           ++VGF+L
Sbjct: 637 IKQEDANVITTDWSRGATIPYEQATANTRMVGAQITELIKFLNNQTGNTPASFYLVGFSL 696

Query: 568 GAHVAGVTGRNL 533
           GAH++G  GR +
Sbjct: 697 GAHISGYVGRRI 708


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
 Frame = -1

Query: 736 LRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN-LKLPLNK----VHIVGFN 572
           LR  + NVI+VDW   +   Y  AV     VG+ +A F+K  L L  ++     H +GF+
Sbjct: 120 LRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFMKTILSLSGSREGGAFHSIGFS 179

Query: 571 LGAHVAGVTGRNLE 530
           LGAH++G  G+ L+
Sbjct: 180 LGAHISGYVGQRLK 193



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -2

Query: 471 LRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCT 331
           +RL   DAQ+V+VIHT        G+    GH+DF+ NG   Q GC+
Sbjct: 219 VRLDRLDAQFVDVIHTS----YVFGITAPHGHMDFYPNGGTSQRGCS 261


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 338 PGWTRRPLTKKSMC-PIAMPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGLDRN 514
           P    +P+    +C P+  P P +++P P   I  +   + VP+  TL  QS A  L+  
Sbjct: 193 PSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTPGTLNVQSPASILNPG 252

Query: 515 S 517
           S
Sbjct: 253 S 253


>SB_27171| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = -2

Query: 405 KNGLGIAIG---HIDFFVNGRLVQPGCTNNLCSHNRA 304
           K+  G+ IG   H+D  VNG  VQ       C+HN+A
Sbjct: 12  KSSEGMYIGADLHLDKDVNGAYVQGSFIGGFCTHNKA 48


>SB_58542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 634 IATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 512
           + +FL  + +   K H+ G ++G H+ GV       +VA +
Sbjct: 120 LLSFLHAVGVNKRKFHLAGISMGGHIVGVYAAQHPARVASV 160


>SB_3986| Best HMM Match : C2 (HMM E-Value=2.9e-31)
          Length = 778

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  VETNFIGHHRKLRFKFCRHHKWN 131
           VE NF+GH R+ R   CR  K N
Sbjct: 233 VERNFVGHRRRCRRVVCRATKSN 255


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 88  TENFVLSFVGITNGMGTSCRYLLGTFQTHALQ-VWQYPFQ--LEILGNYLRLS 237
           +E     FV +TN M T+C+  +     H  + VW+Y     +E LGN +RL+
Sbjct: 394 SERMTALFVKVTNQMITACKNYI---TEHGYKNVWEYTHSELIEKLGNCIRLN 443


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,770,891
Number of Sequences: 59808
Number of extensions: 462938
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1227
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)