Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0756
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.35 
At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.35 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.35 
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    28   7.4  
At1g49590.1 68414.m05560 formin-binding protein-related similar ...    28   7.4  
At4g00350.1 68417.m00046 MATE efflux family protein similar to r...    27   9.8  
At1g24190.1 68414.m03051 paired amphipathic helix repeat-contain...    27   9.8  

>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 718 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 539
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 538 NLEGKVAR 515
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 718 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 539
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 538 NLEGKVAR 515
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 718 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 539
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 538 NLEGKVAR 515
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = -2

Query: 480 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGIAIGHIDFFVNGRLVQPGCTNNLCSHN 310
           N  + L  N  Q +EV+  +  G     L   + H       RL++   T+ LC  N
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRN 473


>At1g49590.1 68414.m05560 formin-binding protein-related similar to
           formin binding protein 21 (GI:3550080) [Homo sapiens];
           similar to formin binding protein 21 (GI:3550077) [Mus
           musculus]; similar to Dinap1-interacting protein 1
           (GI:8745458) [Crypthecodinium cohnii]
          Length = 242

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 212 ISS*NGYCQTCKAWVWNVPSKYRH 141
           +S  N +C+ CK W+ N P+  R+
Sbjct: 6   VSQGNKWCEFCKIWIQNNPTSIRN 29


>At4g00350.1 68417.m00046 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554
           Uncharacterized membrane protein family
          Length = 542

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 73  ILLVITENFVLSFV-GITNGMGTSCRYLLGTFQTHALQVWQYPFQLEILGNYLRLSPL 243
           I L +  NF   F+ G+ + + T C    G  Q   L V+     L +LG  + L PL
Sbjct: 130 IALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPL 187


>At1g24190.1 68414.m03051 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1353

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 289 CNNHAWQTLRKSCSTEAEITANNCRGFLVEMGTAKLVKHG 170
           CNN+       +C TE E+  N+  G  +E+G  KL+ +G
Sbjct: 860 CNNNLKPV---TCGTELELKMNDGNGPKLEVGNKKLLTNG 896


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,071,998
Number of Sequences: 28952
Number of extensions: 311246
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)