Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0755
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    29   0.68 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   2.1  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   3.6  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   4.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.8  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   4.8  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   8.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    25   8.4  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.4  
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     25   8.4  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = -1

Query: 447 DGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGD--GSGSLSNDVLKGKSSGSERP 274
           D +S F++E+ + E    I NS+  S   + ++    D     S S   ++ +++ +   
Sbjct: 64  DEYSEFSNEDDEAE----IDNSFADSIPNEPEIPDMQDEYSRDSHSQQSVEEQNNTTNTD 119

Query: 273 QDAAENGISPSAEPTDAETLGTARTKLSRVP 181
           +DA+ N  S +A+ +D  TLG   ++ +  P
Sbjct: 120 EDASVNEFSVAADISDVNTLGKDNSESTEEP 150


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 376 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 492
           AITIGD  + L  +   +++GP V +F  + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
 Frame = -1

Query: 339 GDGSGSLSNDVLKGKSSGSERPQ-DAAENGI-----SPSAEPTDAET 217
           G GSG L ND L+ K S    P     +N +      P  +P + ET
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVGGPETDPGNMET 163


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 21/67 (31%), Positives = 29/67 (43%)
 Frame = +1

Query: 298 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 477
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 478 LTDYAAE 498
           + DY AE
Sbjct: 131 VGDYVAE 137


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 30/120 (25%), Positives = 47/120 (39%)
 Frame = -1

Query: 375  SSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAENGISPSAEPTDAETLGTARTK 196
            +S+ +D     + D S  L N  +   S  S    DAA++      EP      GTA  K
Sbjct: 868  ASNESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALKPVEGTADPK 927

Query: 195  LSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNNSPIS 16
             ++     T  K  +   S+   V R +   ++D  G  +     S +  SA L + P S
Sbjct: 928  STKRNHQET-EKTADTDVSSTEPVKRQKTADVNDDVGEEEVKQSVSEQVDSAQLTSEPKS 986


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 369 DVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQDAAEN 256
           +  DN ++     SGS + D +  +  G+E+ +D  EN
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLEN 362


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 424 GREVGPAVNNFLEKIPVYLTDYAAEVSRVWSTSPNS 531
           G E+G AVN+ L  I   + D  + ++ V+ ++ +S
Sbjct: 134 GEEIGTAVNDTLHAIADEIEDTVSSLNEVFQSAEDS 169


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = -1

Query: 447 DGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEGDGSGSLSNDVLKGKSSGSERPQD 268
           D  S+ +S E +     D  +S  SSD        + D S S S+   +  S GS+    
Sbjct: 163 DSSSSSSSSESESSSE-DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSS 221

Query: 267 AAENGISPSAEPTDAET 217
           ++ +    S+E  D+ +
Sbjct: 222 SSSSESESSSEDNDSSS 238


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 425 PKRLIWRLDLTSPI 384
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 427 REVGPAVNNFLEKIPVYLTDYAAEVSRVWSTSPNSSSTDYCKLLERYL*IKNKLCS 594
           R +G    NF+     + TD    V R  STS  + S +  +LL+    I N +C+
Sbjct: 224 RILGSVSRNFMGLPREFFTDTGNYVLRFTSTSAANGSVNENQLLQAAHGIANDVCA 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,164,151
Number of Sequences: 5004
Number of extensions: 39643
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)