Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0754
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    29   0.64 
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    28   1.1  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.6  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   3.4  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    26   4.5  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   6.0  

>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = +3

Query: 45  RLSKRNNTKYLC---SASLGELLRQSITIHI 128
           R +KR+N +YLC   SAS+G +LR ++ I++
Sbjct: 300 RFNKRDNEEYLCTHPSASVGGILRGNLHINL 330


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 549 FVEKHFSPSCLS*DYNIRISSISSCNGPHAC 457
           F E+    SC+  D  +R++SI  CN    C
Sbjct: 375 FKERILEMSCVDADIGVRVASIRLCNAMRTC 405


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 404 WLNIIRRGKYSIAMSFANVLKSY 336
           WL +I   +Y +A  FAN LK Y
Sbjct: 465 WLLVISVDQYHLATKFANYLKEY 487


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 509 SYDKHDGEKCFSTNYILRNLPWLL 580
           S D HD    F   Y++ N PW +
Sbjct: 123 STDDHDWHDIFMIGYLISNAPWFI 146


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 421 PLATDSLLSTDKAGMWAVAAGYGRYSDVIILRQTRWREMFFYKLYP*KPAVAITVM 588
           PL T  + S   A  W  A   G      I ++T WR +FF  L     A A+ V+
Sbjct: 214 PLRTRPMYSGILATAWGAALVAGPIIGGAICQRTTWRWIFFINLPSGGIATALIVV 269


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 330 MNCNGRRLNP*ATMEQEWGSQYDSESTARFLPSNQQ 223
           +N N  + NP  ++   W S   S S++  LP   +
Sbjct: 21  LNTNEEQTNPLESLRDGWASSNSSSSSSLLLPDENE 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,657
Number of Sequences: 5004
Number of extensions: 71525
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)