Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0754
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 31 1.2
12_01_0002 - 4477-6144,6571-7440 30 1.5
11_01_0003 - 6099-7766,8193-9062 30 1.5
07_03_1619 + 28174991-28175804,28175945-28175968,28176075-281761... 30 2.0
08_01_0705 + 6231220-6231390,6231900-6231954,6232043-6232194,623... 29 3.6
09_02_0406 - 8629287-8629304,8629384-8629865,8629977-8630291,863... 29 4.7
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 28 6.2
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169 28 6.2
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 8.3
05_03_0416 + 13684604-13688050 28 8.3
>02_05_0226 +
26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 92 GGAIAPINYHPYLAGLLIDINELQSPAACGGSIL 193
GGA+AP+ + +L++ + SP+ACGG L
Sbjct: 482 GGAVAPVPTWTLQSRMLMNGTSMSSPSACGGVAL 515
>12_01_0002 - 4477-6144,6571-7440
Length = 845
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 SLPLPAS*LQLIAGSMEEIVQYFHCRT-GNPIPVPWWLKDSSV-FHCSSSS 335
S P PAS +AGS+ + Q + T +P P+P +D++ FHC S+
Sbjct: 696 SPPFPASCYHKVAGSLGRMAQLLYLYTQAHPTPIPAADEDATQRFHCLVSA 746
>11_01_0003 - 6099-7766,8193-9062
Length = 845
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 189 SLPLPAS*LQLIAGSMEEIVQYFHCRT-GNPIPVPWWLKDSSV-FHCSSSS 335
S P PAS +AGS+ + Q + T +P P+P +D++ FHC S+
Sbjct: 696 SPPFPASCYHKVAGSLGRMAQLLYLYTQAHPTPIPAADEDATQRFHCLVSA 746
>07_03_1619 +
28174991-28175804,28175945-28175968,28176075-28176170,
28176285-28176466,28176623-28176836,28177262-28177499,
28177709-28177865,28177950-28178246
Length = 673
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +3
Query: 579 YGNVVLDSNICTSGVGGVGICRGDSGGPL 665
YG+ V GV +CRGDS GPL
Sbjct: 66 YGSAAGSFGAAPDAVYGVALCRGDSKGPL 94
>08_01_0705 +
6231220-6231390,6231900-6231954,6232043-6232194,
6232252-6232335,6232614-6232797,6232885-6232988,
6233109-6233183,6233366-6233405,6233495-6233577,
6233687-6233764,6233868-6234011,6234093-6234160,
6234831-6234945,6235045-6235201,6235311-6235408
Length = 535
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 2 FVGWLEKVGIKTAAKIKQAEQHQ----IFMQRIVGGAIAPINYHPYLAGLLIDINE 157
F+G+ G+ AAK+ + Q +F+QR GG ++ + Y A + +IN+
Sbjct: 324 FLGYFIDKGVSAAAKVVRKAYPQEKVGVFVQRGRGGPLSVVEYSEMDAAMTTEINQ 379
>09_02_0406 -
8629287-8629304,8629384-8629865,8629977-8630291,
8630381-8630576
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 9 DGSKKLALKRLQRLSKRNNTKYLCSASLGELLRQSITIHIWQV 137
DG+ K L L+++++R +T+ LC LLR S H+W V
Sbjct: 4 DGTLKSRLILLRKVARRLSTRDLCEEFC--LLRISPLAHVWDV 44
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 242 FFHRTSNELQLRCWQG*GSIRRTRPVI 162
FF RT NEL + QG SIR T V+
Sbjct: 169 FFWRTENELDIGSGQGTSSIRSTSSVL 195
>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
Length = 627
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 93 PTMRCINIWCCSACLIFAAVLM 28
P +R WC + CL+F A +M
Sbjct: 600 PVLRYFKFWCSTPCLVFEASVM 621
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 664 NGPPESPRQIPTPPTP 617
N PP PRQ P PP P
Sbjct: 423 NAPPHHPRQEPAPPHP 438
>05_03_0416 + 13684604-13688050
Length = 1148
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 MEEIVQYFHCRTGNPIPVPWWLKDSSVFHC-SSSSIRLQNVCK 359
+EEI+ Y++ G P +PWW+K + C S+ ++ N C+
Sbjct: 781 IEEILIYYY---GGPC-LPWWMKKQTDSSCWESTMLKQTNPCQ 819
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,215
Number of Sequences: 37544
Number of extensions: 534714
Number of successful extensions: 1752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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