Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0754
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    38   9e-05
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.17 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 83  RIVGGAIAPINYHPYLAGLLIDINELQSPAACGGSILTPASILTAAHCWFD 235
           RIVGG    IN  P +AG+       +    CG +I++   +LTAAHC  D
Sbjct: 160 RIVGGTNTGINEFPMMAGIK---RTYEPGMICGATIISKRYVLTAAHCIID 207



 Score = 30.3 bits (65), Expect = 0.018
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 504 YNPTTNTMARNVFLQTISLETCRGYYGNVVLDSNICTSGVGGVGICRGDSGGPL 665
           +N   + + +   L  ++   C  YYGN+++  N   +   G   C+ DSGGP+
Sbjct: 302 FNGMLSHILQKTTLNMLTQVECYKYYGNIMV--NAMCAYAKGKDACQMDSGGPV 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 255 FHCRT-GNPIPVPWWLKDSSVFHCSSSSIRLQNVCK 359
           F C   GNPI    WLKD        + +R+++V K
Sbjct: 327 FTCNVRGNPIKTVSWLKDGKPLGLEEAVLRIESVKK 362


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 316 KTLESLSHHGTGMGFPVR 263
           K +++ SHH T  G P+R
Sbjct: 565 KMIQACSHHLTHKGKPIR 582


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,888
Number of Sequences: 438
Number of extensions: 5519
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)