Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0754
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)...    29   3.9  
At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family...    28   6.9  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    27   9.1  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    27   9.1  
At2g25010.1 68415.m02990 expressed protein                             27   9.1  

>At4g18060.1 68417.m02687 SH3 domain-containing protein 3 (SH3P3)
           nearly identical to SH3 domain-containing protein 3
           [Arabidopsis thaliana] GI:16974680; contains Pfam
           profile PF00018: SH3 domain
          Length = 351

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 53  QAEQHQIFMQRIVGGAIAPINYHPYLAGLLIDI 151
           +++QH++  QR+V       NYH  +A +L DI
Sbjct: 222 ESQQHRLTFQRLVAMVEGEKNYHLRIAAILSDI 254


>At3g29390.1 68416.m03693 hydroxyproline-rich glycoprotein family
           protein sequencing discrepancy between cDNA and genomic
           sequence prevents representation of entire coding
           sequence
          Length = 578

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 658 PPESPRQIPTPPTPLVQMLESKTTLP**PRQVSKDIVCRKTFL 530
           PP  P+ I  PP+  +    SK+ LP  PR  +   +  K+ L
Sbjct: 480 PPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSML 522


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 700 PMSHSFPWWLIVNGPPESPRQIPTPPTPLV 611
           PM HS     +   PP  P   P PPTP+V
Sbjct: 697 PMQHS----TVTKVPPPPPPAPPAPPTPIV 722


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 700 PMSHSFPWWLIVNGPPESPR--QIPTPPTPLVQMLESKTTLP 581
           P   S P   ++  PP  P    +PTPPTP +  + +  TLP
Sbjct: 293 PSPPSLPPIPLIPTPPTLPTIPLLPTPPTPTLPPIPTIPTLP 334


>At2g25010.1 68415.m02990 expressed protein
          Length = 509

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 169 GRVRRIDPYPCQHLNCSSLLVRWKKSCSTFTVVLG 273
           G  R+I P    +   S+L+ RW++  +TF + LG
Sbjct: 61  GYFRKIGPMSLNNSLISALVERWRRETNTFHLPLG 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,838
Number of Sequences: 28952
Number of extensions: 398052
Number of successful extensions: 1213
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)