Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0753
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) / t...    31   1.0  
At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) / t...    31   1.0  
At2g46670.1 68415.m05824 pseudo-response regulator, putative / t...    31   1.0  

>At2g46790.2 68415.m05838 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 351

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 507 TGSESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 361
           + S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 279 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 327


>At2g46790.1 68415.m05837 pseudo-response regulator 9 (APRR9) /
           timing of CAB expression 1-like protein (TL1) identical
           to pseudo-response regulator 9 GI:10281000 from
           [Arabidopsis thaliana], timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022; contains Pfam
           profile PF00072: Response regulator receiver domain;
           identical to cDNA timing of CAB expression 1-like
           protein  GI:9247021
          Length = 468

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 507 TGSESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 361
           + S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 396 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444


>At2g46670.1 68415.m05824 pseudo-response regulator, putative /
           timing of CAB expression 1-like protein, putative
           similar to pseudo-response regulator 9 [Arabidopsis
           thaliana] GI:10281000, timing of CAB expression 1-like
           protein [Arabidopsis thaliana] GI:9247022
          Length = 183

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -3

Query: 507 TGSESRPTEKTRRETQWAVSME*FALCRNRRIRSSRCFQVNRTFSSRQK 361
           + S  +P E+   + +W+ S    AL + R  R  RCF     + SR+K
Sbjct: 111 SSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,245,482
Number of Sequences: 28952
Number of extensions: 239470
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)