Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0752
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative sim...    28   5.9  
At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative sim...    28   5.9  
At4g16070.1 68417.m02437 lipase class 3 family protein low simil...    28   7.9  

>At5g66120.2 68418.m08330 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 442

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 257 ISLVNFPTTPTAVKPPRVGPKTSLNHSIGSS 165
           ++ +  PTT  A     VG KT +NH +G +
Sbjct: 201 VNFIQIPTTVMAQVDSSVGGKTGINHRLGKN 231


>At5g66120.1 68418.m08329 3-dehydroquinate synthase, putative
           similar to aroB [Neisseria gonorrhoeae][GI:2661441];
           contains 3-dehydroquinate synthase domain PF01761
          Length = 338

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 257 ISLVNFPTTPTAVKPPRVGPKTSLNHSIGSS 165
           ++ +  PTT  A     VG KT +NH +G +
Sbjct: 97  VNFIQIPTTVMAQVDSSVGGKTGINHRLGKN 127


>At4g16070.1 68417.m02437 lipase class 3 family protein low
           similarity to calmodulin-binding heat-shock protein
           CaMBP [Nicotiana tabacum] GI:1087073; contains Pfam
           profile PF01764: Lipase, PF03893: Lipase 3 N-terminal
           region
          Length = 654

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 660 RRDTSALESENVVIERKTHRR 722
           RR T AL +E V I+RK H+R
Sbjct: 441 RRSTEALLAETVAIDRKGHKR 461


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,317
Number of Sequences: 28952
Number of extensions: 257209
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)