Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0749
         (823 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.008
UniRef50_Q3A2C1 Cluster: Na+-driven multidrug efflux pump; n=1; ...    34   4.9  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 43.2 bits (97), Expect = 0.008
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -2

Query: 375 AGWWYLPVRTHKRSYHQY 322
           A WWYLP RTHKRSYH+Y
Sbjct: 569 AEWWYLPARTHKRSYHRY 586


>UniRef50_Q3A2C1 Cluster: Na+-driven multidrug efflux pump; n=1;
           Pelobacter carbinolicus DSM 2380|Rep: Na+-driven
           multidrug efflux pump - Pelobacter carbinolicus (strain
           DSM 2380 / Gra Bd 1)
          Length = 464

 Score = 33.9 bits (74), Expect = 4.9
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +2

Query: 134 NLISRVGVFCLNAV*YLATVGASITTCHVLTLNYVSVVF 250
           +L+    VF L A+ +LA +GAS+   H +TLNY + VF
Sbjct: 257 SLLVESSVFALIAL-FLAPLGASVVASHQITLNYSATVF 294


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,811,594
Number of Sequences: 1657284
Number of extensions: 13388850
Number of successful extensions: 24164
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24122
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 70914189703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)