Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0749
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0101 + 15233783-15234601                                         31   0.84 
03_06_0753 + 36015026-36015256,36015780-36015885,36016132-360161...    29   3.4  
05_05_0391 - 24617389-24617508,24617854-24617919,24618156-246182...    29   4.5  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           29   5.9  

>02_03_0101 + 15233783-15234601
          Length = 272

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 151 WGVLS-ERGLISGDSWSQHHNMSCVNVKLC*RCISCLKCKSFIRRESSD*MVH 306
           WG  + E+GL +GD+ S  H+ +C    +C RC     C SF+   ++   +H
Sbjct: 100 WGCYAREKGLRAGDTVSFFHSTACGRFFICCRC----TCMSFLSLPTTSHRIH 148


>03_06_0753 +
           36015026-36015256,36015780-36015885,36016132-36016192,
           36016278-36016573,36016654-36016793,36016880-36016954,
           36017044-36017134,36017677-36017880,36018409-36018453,
           36018745-36018830
          Length = 444

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 477 HLQRKCPTIRHEFYCTTAAPPFKPKRITASRQK*AGWWYLPVRTHKRSYH 328
           +L+RK   I H     TAA P +PK++  S Q        P + H+RS+H
Sbjct: 30  YLRRKRAAIAHLPPSATAAAPDQPKQVRPSNQN------QPKKGHQRSHH 73


>05_05_0391 -
           24617389-24617508,24617854-24617919,24618156-24618204,
           24618855-24618922,24619041-24619086,24619187-24619280,
           24619373-24619435,24619722-24619844,24620370-24620403,
           24621106-24621168,24621447-24621545,24622398-24622454
          Length = 293

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 592 GWFFLYI*LHILFC 551
           GWFFL+  +HI+FC
Sbjct: 186 GWFFLFYLIHIIFC 199


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 424  SRCTVKLMSDCGTFTLQMCCCDI*RKKYITNPNYTLRH 537
            +RC       C T +L +CCCD  R+ ++  P+ T  H
Sbjct: 1015 TRCATDQFLPCLT-SLSICCCDNLRELFVLPPSVTHIH 1051


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,242
Number of Sequences: 37544
Number of extensions: 347596
Number of successful extensions: 533
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)