Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0749
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical pr...    28   9.3  
AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.      28   9.3  

>Z81146-3|CAB03524.1|  496|Caenorhabditis elegans Hypothetical
           protein K10D11.5 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = +2

Query: 185 ATVGASITTCHVLTLNYVSVVFHA*NVNHLYVAKVVIEWSIFVRLT 322
           A V  S TT + L  N         N N L+   V + WS  VRLT
Sbjct: 30  APVDTSTTTWYPLNFNETEPPLFPNNFNCLFNIMVPVGWSAVVRLT 75


>Z81113-5|CAB03282.3|  404|Caenorhabditis elegans Hypothetical
           protein T03F6.5 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 320 LVERKWTIQSLLSRRINDLHFK-HEIQR 240
           ++E+KWT    L R++NDL  K  E QR
Sbjct: 48  ILEKKWTTVLRLQRKVNDLESKLQESQR 75


>AF164430-1|AAF82632.1|  404|Caenorhabditis elegans LIS-1 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 320 LVERKWTIQSLLSRRINDLHFK-HEIQR 240
           ++E+KWT    L R++NDL  K  E QR
Sbjct: 48  ILEKKWTTVLRLQRKVNDLESKLQESQR 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,814
Number of Sequences: 27780
Number of extensions: 348798
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)