Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0749
         (823 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11180.1 68414.m01281 secretory carrier membrane protein (SCA...    31   1.2  
At1g17840.1 68414.m02208 ABC transporter family protein similar ...    30   2.1  
At3g17265.1 68416.m02207 F-box family protein                          29   4.9  
At1g61250.1 68414.m06902 secretory carrier membrane protein (SCA...    29   4.9  

>At1g11180.1 68414.m01281 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 291

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -1

Query: 592 GWFFLYI*LHILFC 551
           GWFFL+  LHILFC
Sbjct: 195 GWFFLFYMLHILFC 208


>At1g17840.1 68414.m02208 ABC transporter family protein similar to
           ABC transporter GI:10280532 from [Homo sapiens]
          Length = 703

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 599 CLGMVFFIYLTTYIILLEENSCLSV*FGFVIY 504
           C+G ++    T+Y  +L   SC S  FGFV +
Sbjct: 415 CIGTIYLNVGTSYSAILARGSCASFVFGFVTF 446


>At3g17265.1 68416.m02207 F-box family protein
          Length = 345

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 582 KNHP*ALTCSRKFQIYKYNMYIFKTLRSVLKLCFIQ 689
           KN+P  +    KF+IY++N   ++ L  +  +CFI+
Sbjct: 145 KNNPQLILLVIKFKIYEFNSDSWRILDDISPVCFIR 180


>At1g61250.1 68414.m06902 secretory carrier membrane protein (SCAMP)
           family protein (SC3) contains Pfam domain, PF04144:
           SCAMP family
          Length = 289

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 592 GWFFLYI*LHILFC 551
           GWFFL+  LHI FC
Sbjct: 193 GWFFLFYMLHIAFC 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,962
Number of Sequences: 28952
Number of extensions: 299153
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)