Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0748
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    25   0.79 
AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    24   1.0  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    23   1.8  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   1.8  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   3.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   9.7  

>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 197 GKKLVELGFAKASFPKELKRIPLS 268
           G+ LVE G  K   P+E  +I LS
Sbjct: 20  GRTLVEKGLRKQGVPREATKITLS 43


>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 496 FRSKLNKYKHHEMKNIRIKSSSEKNQMSYYNYN-YSVSL 609
           FR K    K   +KN R+K+++   Q+ Y +Y  Y +S+
Sbjct: 118 FRLKQLNAKVEMLKNARVKNTALWKQLRYEHYRLYQLSV 156


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 557 LDFIRMFFIS*CLYLFSFDLNGINIKFFVPIKALLV 450
           L+F + F I    Y   + L  +N  FFV +K LLV
Sbjct: 142 LEFYKQFAIE---YFQMYVLFFVNFAFFVVVKMLLV 174


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 557 LDFIRMFFIS*CLYLFSFDLNGINIKFFVPIKALLV 450
           L+F + F I    Y   + L  +N  FFV +K LLV
Sbjct: 142 LEFYKQFAIE---YFQMYVLFFVNFAFFVVVKMLLV 174


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 189 WILVKNWWSLDLQKHHFLK 245
           W+L+KN  + D + H F K
Sbjct: 405 WVLLKNKVTSDTRTHQFAK 423


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 110 IGRDNDDLVSTVLLHLPQPKSKDVQTLDIGK 202
           +G ++ + V TV   L       VQT+D G+
Sbjct: 313 VGGESVETVLTVTAPLKAKIEPQVQTIDFGR 343



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 278  PLLYYQQKHKQKAS 319
            P+LY+  +HK+K S
Sbjct: 1520 PMLYFVIEHKKKTS 1533


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,915
Number of Sequences: 336
Number of extensions: 3656
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)