Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0748
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   1.1  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    26   4.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   6.0  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    25   7.9  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   7.9  

>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 156 YLSLRV-KMFKHWILVKNWWSLDL-QKHHFL 242
           Y  LRV +  +HW L +NW S+ L QK +F+
Sbjct: 64  YSKLRVYQTVRHWSLKQNWSSMSLDQKRNFI 94


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 420 QEVTATVKIYHQKCFNRNKEFNINSIQVKT 509
           +++T  V  Y QKC   N+EFN+ ++ VK+
Sbjct: 408 RKMTRDVYKYMQKCVETNREFNL-TLAVKS 436


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 613  FEEKPNNYNCNNSFGSFLN 557
            + + P NY+C   F SFLN
Sbjct: 1300 YVDPPPNYSCGEYFSSFLN 1318


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 17  PVKLWGIEVVSGNAVNWLECVARGQQVTLKPIG 115
           P K W  E  +G A  W+E + +   ++L P G
Sbjct: 545 PTKSWSFEDPNGPASAWVELLDKASSISL-PFG 576


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 245 ELKRIPLSHKLPLLYYQQKHKQKASETAFGLRISHQFQHISFIGEKVHSLL 397
           E K  P +H+L + YYQ  H     E AF  R++ + +  S++ ++ H ++
Sbjct: 207 EGKSAPGNHELVVDYYQILHAAPTGEEAFTNRLNAEAEP-SYLLDQRHLVI 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,832
Number of Sequences: 5004
Number of extensions: 58420
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)