Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0748
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1142 - 34391144-34391590,34391715-34391904,34392058-343921...    29   2.7  
05_07_0231 - 28547468-28547636,28547767-28547839,28548382-285484...    29   3.6  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   6.2  
11_06_0530 + 24696399-24697592                                         28   6.2  
03_05_1156 - 30814037-30814190,30814277-30815166                       28   6.2  

>02_05_1142 - 34391144-34391590,34391715-34391904,34392058-34392128,
            34392403-34392515,34392656-34392749,34392843-34392908,
            34393120-34393282,34393441-34393547,34393918-34394115,
            34394204-34394329,34394800-34394904,34395056-34395098,
            34395334-34395391,34395479-34395659,34395751-34395917,
            34396010-34396249,34396341-34396781,34397147-34397272,
            34397457-34397561,34397935-34398002,34398169-34398272,
            34398856-34399008,34399472-34399570,34399919-34400046,
            34400149-34400300,34400423-34400502
          Length = 1274

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 417  SQEVTATVKIYHQKCFNRNKEFNINSIQVKTK 512
            S    AT ++ HQ  FN+ KEF  N I V  K
Sbjct: 1027 SDNSVATRRLLHQAIFNKRKEFQWNKITVFLK 1058


>05_07_0231 -
           28547468-28547636,28547767-28547839,28548382-28548463,
           28548880-28548970,28549042-28549118,28549493-28549534,
           28550101-28550108,28550404-28550534,28551358-28551385,
           28551580-28551689,28551843-28551988,28552670-28552711,
           28552824-28552832,28552888-28553032,28553596-28553687
          Length = 414

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +2

Query: 92  QVTLKPIGRDNDDLVSTVLLHLPQP 166
           +V LKP+   + DL++TVLL LP P
Sbjct: 63  RVMLKPLEDPHVDLIATVLLQLPLP 87


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 109 WL*CHLLAPSNTFQP-IDCIPTNYFNSPQLN 20
           WL  H  AP+N F+P +  +PT  FN+ + N
Sbjct: 395 WLMDHRKAPNNMFRPLLSSVPTTTFNAGKGN 425


>11_06_0530 + 24696399-24697592
          Length = 397

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 NTIESQIAPALLSAEAQAKSLRNGIWSENLPPIPAYIVY 372
           N++  +I P L+S+      LRN   +  +PP+PA +VY
Sbjct: 183 NSLSGEI-PKLVSSPLVHLDLRNNRLTGGVPPLPATLVY 220


>03_05_1156 - 30814037-30814190,30814277-30815166
          Length = 347

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 IMMI*FLLYYC-IYLSLRVKMFKHWILVKNWWSLDLQ 227
           I+M  F +Y   IY   R KM  +W+L +    +DL+
Sbjct: 250 IIMAQFFMYLAEIYTERRQKMLANWVLTRKMTKMDLE 286


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,570
Number of Sequences: 37544
Number of extensions: 319924
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)