Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0748
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)                    31   1.2  
SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)                 30   1.6  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          28   8.4  
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)         28   8.4  

>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
          Length = 957

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +2

Query: 107 PIGRDNDDLVSTVLLHLPQPKSKDVQTLDIGKKLVELGFAKASFPKELKRIPLSHKLPLL 286
           P+G    D   ++L+H    +  + Q  ++GK  V +      F K +  +   HK   +
Sbjct: 662 PVGPFITDYSESILVHRAVVEDLNAQITNLGKGKVSIMEDSKEFRKGIHHLEWEHK--RM 719

Query: 287 YYQQKHKQKASETAFGLRISHQFQHIS 367
           Y Q +  Q  +     LR++ + Q +S
Sbjct: 720 YMQAEDLQTKARDIQLLRVTKELQQVS 746


>SB_36188| Best HMM Match : FMN_bind (HMM E-Value=0.51)
          Length = 486

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 299 KHKQKASETAFGLRISHQFQHISFIGEKVHSLL 397
           K ++K S  AF LR+ +  QH  FIGE ++  L
Sbjct: 80  KREEKESVAAFKLRLWNAIQHCGFIGETLNKNL 112


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 161 QPKSKDVQTLDIGKKLVELGFAKASFPKELKRIPLSHKLPL 283
           +PK  D +     K+ +E G +KA  PK  +R+PL+   PL
Sbjct: 468 KPKEPDSEKDKKSKEKMETGKSKAVSPKPKERVPLTKPPPL 508


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = -2

Query: 249 NSLGNDAFANPSS-TNFLPISNV*TSLLLG*GKCNNTVETRSSLSLPIGFNVTCWPLATH 73
           +SL +D   + SS ++FL +S++ +  L      +  + + SSLS+ +  + +     T 
Sbjct: 531 SSLPSDFLTSSSSLSDFLTLSSLLSDFLTSSSSLSVFLTSSSSLSVFLTSSSSLSDFLTS 590

Query: 72  SSQLTAFPLTTSIPHS-LTGS 13
           SS L+ F  ++S+P   LT S
Sbjct: 591 SSSLSVFLTSSSLPSDFLTSS 611


>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
          Length = 2024

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 502 SKLNKYKHHEMKNIRIKSSSEKNQMSYYNYNYSVSLQN 615
           S+L+     EMK IR ++   K ++S    NY  SL+N
Sbjct: 165 SQLSSTSETEMKKIREENVVVKRKLSELESNYKTSLEN 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,659,965
Number of Sequences: 59808
Number of extensions: 373161
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)